| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0017 |
|---|
| Symbol | |
|---|
| ID | 5320844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 15694 |
|---|
| End bp | 16254 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640788948 |
|---|
| Product | OstA family protein |
|---|
| Protein accession | YP_001325712 |
|---|
| Protein GI | 150395245 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000148492 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTCA AACCTGCCGC TCTTTTTAGG ATTTCAGCCG CTCTGGCCGT GGCCGGGCTC
GGCGCTTCTC TCATTGCTTC CGCCGCTTTC GCGCAGGCAA CCTCCAGCCG CATGCAGGGC
CTCCAGCTTT CCAACGACCA GCCGATCCAG ATCGAGAGCG ACAAGCTGGA GATCAAGGAT
CCCGAGAGCA AGGCGATTTT TACCGGCAAT GTGAAGGTCG TCCAGGGCAC GACGACGCTG
CAGGCCGGCA ACATGACGGT CTTCTACAAG GCGGGCGGCG GTTCGGTCAC CAGCGGCAAC
GCCGACATCG ACCGGATCGA GGTCAATAAC AAGGTATTCC TCAGCTCCGG TACACAGCAG
GCGACGGGCG AAAGCGGCAT CGTCAACCTG ACCAACCAGA CGATCGTGCT CAAGGGCGAG
AAAGTCGTGC TTTCGGAAGG CAAAAACGTC TTCGTCGGCT GCCAGTTGAA CGTCCAAATG
AACACGGGCG AAGCGCAGCT GGACGCCTGC GGCGGCCGCG TACAGATCCA ACTCGATCCG
CAGTCCCGCA AGACGAACTG A
|
|---|
| Protein sequence | MSVKPAALFR ISAALAVAGL GASLIASAAF AQATSSRMQG LQLSNDQPIQ IESDKLEIKD
PESKAIFTGN VKVVQGTTTL QAGNMTVFYK AGGGSVTSGN ADIDRIEVNN KVFLSSGTQQ
ATGESGIVNL TNQTIVLKGE KVVLSEGKNV FVGCQLNVQM NTGEAQLDAC GGRVQIQLDP
QSRKTN
|
|---|
| |