| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0007 |
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| Symbol | |
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| ID | 5320834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 6437 |
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| End bp | 7582 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640788938 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_001325702 |
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| Protein GI | 150395235 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000223665 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACCCCG GTTTCGGGGT CTATGTGCAC TGGCCGTTCT GCGCGGCGAA ATGCCCCTAT
TGCGATTTCA ACAGCCACGT CCGCCACACG CCGGTGGAGC AGCCCCGTTT CGTCGCCGCC
TTCCTGAAGG AAATGGCGGC AGTGCGCGAT CTTTCCGGGC CCAGAACCGT CACCAGCATT
TTCATGGGCG GGGGCACTCC GTCGCTGATG GACCCTCAGA CGGTGGAGGC GATCCTCGAT
GGCATAGCCA GGCACTGGCA TGTGCCTGAC GGCATCGAGA TTACCATGGA GGCCAACCCC
TCAAGCGTCG AGGCGACGCG CTTTCGCGGC TATCGGGCCG CCGGCGTCAA CCGCGTCTCG
CTTGGCGTCC AGGCGCTGAA CGATCGCGAC CTGAAATTCC TCGGAAGGCT GCACAATGTC
GAGGATGCCC TCAAGGCGAT ACGGCTCGCG CGCGAGATCT TTCCGCGTAT GTCCTTCGAC
CTGATCTATG CGCGGCCCAA CCAGACCGTC GAGGAATGGG AGCGGGAGCT GAAGGAGGCG
GTCTCCTACG CCGTCGATCA TCTGTCTCTC TACCAATTGA CCATCGAGGA AGGCACTCCG
TTTTACGGTC TGCACAAGGC AGGCAAGCTC ATCGTTCCGG ACGGCGAGCA GTCGGCGGTG
CTTTATGAAG CGACCCAGGA GATCACCGCC GACATCGGCA TGCCCGCCTA TGAGGTGTCC
AACCATGCCC GGCCGGGCGC CGAGAGCCGG CACAACCTCA CCTATTGGCG CTATGGCGAC
TATGCGGGCA TCGGCCCCGG CGCTCACGGC CGGCTGCAGG TCGGATCGGG CAAGATCGCG
ACCGCAACCG AGCGCAACCC CGAGGCCTGG CTGCAAAACG TCGAAGAGCA TGGTGACGGC
ATGGTCGAAC GGGAGTTTCT CGATTTCGAG GCACAGGCCG ATGAGCTTTT GCTGATGGGG
TTGAGACTGC GCGAAGGTGT CGATCTGGCC CGGTGGCAGA GTCTCTCGGG CCGCAATCCG
GACCCGGCCC GGGAAGAATT CCTGATAGAA CACGGCTTCA TAGAACGTAT CGGCAATTCG
CGGCTGCGCT GCACGCCCTC CGGCATGCTC ATTTTGGATG CCGTGGTAGC CGACCTCGCC
TGCTGA
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| Protein sequence | MDPGFGVYVH WPFCAAKCPY CDFNSHVRHT PVEQPRFVAA FLKEMAAVRD LSGPRTVTSI
FMGGGTPSLM DPQTVEAILD GIARHWHVPD GIEITMEANP SSVEATRFRG YRAAGVNRVS
LGVQALNDRD LKFLGRLHNV EDALKAIRLA REIFPRMSFD LIYARPNQTV EEWERELKEA
VSYAVDHLSL YQLTIEEGTP FYGLHKAGKL IVPDGEQSAV LYEATQEITA DIGMPAYEVS
NHARPGAESR HNLTYWRYGD YAGIGPGAHG RLQVGSGKIA TATERNPEAW LQNVEEHGDG
MVEREFLDFE AQADELLLMG LRLREGVDLA RWQSLSGRNP DPAREEFLIE HGFIERIGNS
RLRCTPSGML ILDAVVADLA C
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