| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maeo_0242 |
|---|
| Symbol | |
|---|
| ID | 5326754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus aeolicus Nankai-3 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009635 |
|---|
| Strand | - |
|---|
| Start bp | 267852 |
|---|
| End bp | 269033 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640787636 |
|---|
| Product | TraB family protein |
|---|
| Protein accession | YP_001324444 |
|---|
| Protein GI | 150400678 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1916] Uncharacterized homolog of PrgY (pheromone shutdown protein) |
|---|
| TIGRFAM ID | [TIGR00261] pheromone shutdown-related protein TraB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.605672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATAA AAATAAACAA TGGGATTAAT GAATGTGACA TACATCTAAT AGGCACCGCG
CATGTTTCGG AGGATAGTGT GGATAAGGTG GAAAAATCAA TATGCGAGAT AAACCCCGAT
TTAATAGCAG TTGAGCTTGA TAAAGATAGA TTTTTTGCAA TAACTAAAAA TAATACAAAT
GACCCCGATA ATCTTAAAAA AGTAGATTTA ATAAAAATCA TAAAAGAAGG AAATATCAGT
CTTTTTTTAG TGCATACTCT TTTAGCAAAT TTTCAGAAAG ATATAGGGGA GAAATTTGGC
ATAAAGCCGG GTAGCGAAAT GAAAAAGGCA ATTGATTTAG CAATAGCATA CAATAAACCT
ATATCATTAA TAGATAGACC AATAAACATT ACTTTAAAAA GAGCAATACA ATCACTGTCA
TCTAAGGAAA AGCTACAAAT TATGCTGAGT TTCATTAGTG GCGACAAAAA TATTGACTTA
GACGAAAAAT CAATAAATGA AATGGTAGAT AATGCAGATG ATTTAATAGA TGTATTGAAA
GAAGTATCTC CTACAATATA TGGTGTTTTA GTCGATGAAC GAGATAAATA TATGGCAAAA
AATATATATG AACTCAGCAA AGAAAAAGAA AGAATATTGG TGGTTGTAGG AGCGGGGCAT
TTAAAAGGCA TCATCAACTA TTTAAAAAAG CTTGAAAATA ATGAAATATA TATAAATTTA
AAGGAGCTAA CAGAATTAAA AAAAAATAAA AATTATCTAA AAATAATTAT TTCCACATTA
ATTGTATCAA TTGTAGTTTA TGGATTTTGG GCAATTGCAT CGGACCCAGA AGCTCTAAAA
AAGCTCACGA TTGACTGGAT ACTTATAAAT GGTGGTTTAT CTGCTCTTGG GGCAATTATT
GCAAGAGGTA AATTTCCATC AGTTATTGCA GCATTTTTGG GAGCTCCCAT AACTTCATTA
ATACCTGTTG TAGGGGCGGG ATATATTGCC GGATTAGTCG AGCTAAAATA TAGGGGGATT
ACCTCCGATG ATATTGACGA GCTTTTAAAT TCCAATAATA TAAAAAATTT AATGAAAAAT
AACAGTGCCA TGAGAGTTTT AATGGTTGCC ACACTTTCCA GTATTGGAAG TGCTATTGGG
ACTTTTTATT TTATTCCAAA ATTTTTAGGA CATTTGTTTT AA
|
|---|
| Protein sequence | MNIKINNGIN ECDIHLIGTA HVSEDSVDKV EKSICEINPD LIAVELDKDR FFAITKNNTN
DPDNLKKVDL IKIIKEGNIS LFLVHTLLAN FQKDIGEKFG IKPGSEMKKA IDLAIAYNKP
ISLIDRPINI TLKRAIQSLS SKEKLQIMLS FISGDKNIDL DEKSINEMVD NADDLIDVLK
EVSPTIYGVL VDERDKYMAK NIYELSKEKE RILVVVGAGH LKGIINYLKK LENNEIYINL
KELTELKKNK NYLKIIISTL IVSIVVYGFW AIASDPEALK KLTIDWILIN GGLSALGAII
ARGKFPSVIA AFLGAPITSL IPVVGAGYIA GLVELKYRGI TSDDIDELLN SNNIKNLMKN
NSAMRVLMVA TLSSIGSAIG TFYFIPKFLG HLF
|
|---|
| |