Gene Smed_6522 details

Gene Information

• Locus tag: Smed_6522
• ID: 5320825
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009622
• Strand: -
• Start bp: 211609
• End bp: 215082
• Gene Length: 3474 bp
• Protein Length: 1157 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640778071
• Product: hypothetical protein
• Protein accession: YP_001315003
• Protein GI: 150378409

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.0162687
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.104781
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCGTTCAA AAGCGACTAA AGCGAGGCGC GCCCCGGCAG CGTCCGACGA GTTTTCAATT 
GCCAGAGCCC AAGTTCGAAA GAAGAACAAC CCCGCTATGG GGTTGAGGAC GCTTAGGAGA 
AATGAAGGAC CTGCTAAACT GTACAGGCTA GTGGGACGAT TTGCTCGACA TCCCTCCTAC 
CGTGTTCTGA CGCTTGCCCA TCCCTTTCCC AAGAACATGT CGGAGCTGTC GAGGAACGTC 
ACTTACAAGA CAGAGGGTTT CGCCACGGAA TTCGCCTGGT TGGCAAGCAT AGTGAAAGCC 
TACGCTGCTG AAATCCAAGT TTTCGTGGGA ATGAGGCAGG AGCTTGAGAC AGCTTTCCTG 
TCAGGAAATC ATCAAAGGAT TGAAGAACTC CACCAGGAAG CGGAATCGAC TTTCGGACAA 
TCCCTTTGGC TTTCAGAAAG CCGCATCCTT TATTTCGATC TGCCTGGCGT AACCGGGAAC 
AGAGCCCATT ATACACAGTC GTTTCGGGAG ACAGACGCTC CACCGCTGTT CAATTTCCTA 
GTCAGTTGGA TATCTTACAG GGCTAGCGCC GGAGTCTCTG CCGGTGAAGT GGACCGATTG 
CTGGGCCAGG TCTTGAAGGA AGCCGCAGGT CTCGGTGGCG TAGCGTTTGC CCTAAATGGT 
CGATATCCAG AGGTTGATCA TGAGGCTGCG GCAGACATGC TGGGTTACAG TGATACGCTG 
CCGCTGATCG ACCGCTATCA AGTGATGTTG CTGGCGTTGC AGTGCCTCTT CGCCGACGGG 
GACCTTTCCG TCGAGGATGA TGATGCGATC AAAGTTGTGC TTTCCGATCT CTGCAGGCAC 
ATCGCGGACC CGCAGCTTTA TCGGCTGGCG CGAGCGCTGG GAATTCAAGT CTCCATTCCC 
TTGGATGAGC GGTTTCTTTC GCTGCAGGAC GACTTCAATG CTGGACTTTT CACCAAAGTC 
ATCGCTGAGA TCGGTGCCGC CGATGAAACG AAAGATATTG AGACTCTTGA GCTGCTGCTT 
CGCTCTAAAA TGCAGGTCGG GGAGCGCGAG GAGGCTGTCC CGGCTGAGAC TCAAGTTCGA 
ACGCTTTACA AGGAAATCGA GAACGATCTG GCGGCTGTTC TCTCATGTGC AGATGATGGT 
GTTGAAGCGC GCCTTAGACT TCAGAAAGTT ATTCTGTCGC ACTGCAATTC GGCTTGGGCG 
GCATCGCTCC GCCTCATCCT AGAACGGCAG ACGCACGATG AGCGGGTTTT CGAACCTAAT 
CGCATCCAAA CCGCGCTTGG CCTTCGATCG GCGATTGAGC AGCCCTATCT CATTCTTACG 
CTGCCCACAG GTAAAGTTAG GCACGAATTG GCAGCGCGGA TTGCGAATGA CCGCCCAAAC 
AGCGTCACCA TCGCTATGCT GGAGCAGCTT TGTGGGGATG AGAGCCCCTC TGCCGCAAGC 
TTCATCGGGA TGGATCAGGC CATAGCCGTC TTAAGGCATG GAGAGTCAGT CGAGGCGATC 
GAAATTTTAA AGAAGTTGAC CGCTTTAACT GAGCCTCAGA TCGTTCAGTT TGAAGCCTTT 
CGATTGCTTG CTGCCGCTTA TTGGCGCGAT GGTCAGATTG CGGAAATGGC CGATCTGACG 
GCTCGATTGT TCGTGCAATC ACGATATTTC GGTGCCATTT TGCCGATACG AGATCTGGTC 
GACGAGCTCC TTAAAAGACA CAACGAGCCG TTGGTCGGTT CGGCTACACG CGGTCGGCTC 
AGTGTCGCGA TCGTGTTCGA TATATTTTCT CGATATATCT CATCGGAGTA CGATGCTGAG 
CGGGCTGATG CCTACAAGGA CGTCCTAAAA GCCAATTGCA TTCGAAAAGC GTCTGAACTC 
ACCCAGCATC TTGACCGCTT CCCAGTCAAT GAGCTGGTCT ACTTCCTGAG ATACGTGTGC 
GTTTCCGACG TCCTTGATCA ATCGCTCGCA TTGGACACTT CGCGAGCAGT TGAAGACGAG 
CGTGTCGCGA TTCTGCTTCT CATCAGCGAA CTGATAGCAG GCAAAACCCC AGCAGCAATC 
AAAGACGAAC TCCGCGAGAT CAGGACAAGA CAGGTAGTTA GAGAAACCAC GCTCAGGCTG 
GATGAGAGTA AAATCTACGT CAACATTGAA GGGATCAGAC GCTCGATCGA TGTCTCGATG 
CGTGATGACT GGAATCGTTA CCGCCTTCTG AACGATGGTC TCGAGACTGC GCTATTCGAG 
ATTATTGAAA AGGTGAGAGG CGAAAAGGCC GATCCTCTAC GCATTATTAT CGCGAACCCA 
AGCGAGAGGT TTGCGCTCTT GCGGAAAATA ATTACCGTTC TACGTGACGA ATTCACAATG 
AATAAGGAGT TTGGGCTGAA TTCTAATCTC AGCACTAATA TTCGTCACGG TTATGTTGAG 
CGAGAGATAC GTGCCCCGCT TCTCGCCCGC AACCTGGTGA CGAATACCGA CAAGGGCTTC 
TATCTTCCAA ACAAGTTTTG GCTTGAACGG CTGGATAGCG GTGACCCGGA AGAGGAAGCT 
CGACTTTCGG CGCTTTTCAA CAAGTTCTCT ATGAGGATCG ATGACGAGAT CGATCGCGTG 
AATCGCAAAC TGCTGCGCGT AAATTCCGAA GAAACGCCTG AGGGTTTGTT CAAGTACGGG 
ATATCCGACA CCGCTTTAAT GGCTGCCGAT GCAACTTGGT CATCCAAGGA GTCGTTCGAC 
GAATTTATCG ACGCAGTCTT CTCGATCTTC TGGGAGGGAA CTCAGCGCAA TCTGGTTATG 
GTTCGCGCTG CGCTTACGAG CTATGTTCTC GCGGAGTTCA TCGACTCTTT GAACGCTTTG 
GCGCAAGACA TAGCGACCGA TGGATTCAGT CAGCGCCTAC CGGACTTGGA ACATGCCATA 
ACAATGGTGC AGACGGAAAC ACGAGCCGCA GTGGAACGTG TCGCGAGTTG GTTCACGCTG 
TCGAGCAATA ACGAATACCA AGATTTCGAT CTCGCGATTG CATTCCAGGC GGGAATGAAC 
ACCGTTAGGA CCTACTTCCG CAATCTTTCG ATACAGGAAG ACTACGCCTC GAACGGCGAA 
ATAATAATGA ACGGGTGGTG CTTGCCGATT TTCGCGCGCC TGTTCTTCCT CATTCTAGAT 
AACGCCGCGA CACATGGAGC CCGCAATCGA TCGCATCTCA AGATATCGAT GTTCGTCGAA 
GTTCGCGAAA ACCATCTGTT CATCAAGGCA ACCAATGATC TCCCTGTCGA CCATAACAAT 
GCCGAGCTTG CCGAGCGTGC AGCGGAGATC AATCGCGACT ACGGTCAGGC GAGAGCCATG 
GAACTGCTCT CCGAGGAGGG TGGCTCGGGT TATCCCAAGA TATGGAAGCT TCTGAAGACC 
GACCTAAGGA AAAACCACGA CCTGTTCGTG AGCGTTTCAA AAAATGAATT TGGCGTTGAG 
ATACTGCTGC CAACAGCGGG GATAGTAAAT GAGACTGTTG ATAGTCGAGG ATGA 

 

Protein sequence

MRSKATKARR APAASDEFSI ARAQVRKKNN PAMGLRTLRR NEGPAKLYRL VGRFARHPSY 
RVLTLAHPFP KNMSELSRNV TYKTEGFATE FAWLASIVKA YAAEIQVFVG MRQELETAFL 
SGNHQRIEEL HQEAESTFGQ SLWLSESRIL YFDLPGVTGN RAHYTQSFRE TDAPPLFNFL 
VSWISYRASA GVSAGEVDRL LGQVLKEAAG LGGVAFALNG RYPEVDHEAA ADMLGYSDTL 
PLIDRYQVML LALQCLFADG DLSVEDDDAI KVVLSDLCRH IADPQLYRLA RALGIQVSIP 
LDERFLSLQD DFNAGLFTKV IAEIGAADET KDIETLELLL RSKMQVGERE EAVPAETQVR 
TLYKEIENDL AAVLSCADDG VEARLRLQKV ILSHCNSAWA ASLRLILERQ THDERVFEPN 
RIQTALGLRS AIEQPYLILT LPTGKVRHEL AARIANDRPN SVTIAMLEQL CGDESPSAAS 
FIGMDQAIAV LRHGESVEAI EILKKLTALT EPQIVQFEAF RLLAAAYWRD GQIAEMADLT 
ARLFVQSRYF GAILPIRDLV DELLKRHNEP LVGSATRGRL SVAIVFDIFS RYISSEYDAE 
RADAYKDVLK ANCIRKASEL TQHLDRFPVN ELVYFLRYVC VSDVLDQSLA LDTSRAVEDE 
RVAILLLISE LIAGKTPAAI KDELREIRTR QVVRETTLRL DESKIYVNIE GIRRSIDVSM 
RDDWNRYRLL NDGLETALFE IIEKVRGEKA DPLRIIIANP SERFALLRKI ITVLRDEFTM 
NKEFGLNSNL STNIRHGYVE REIRAPLLAR NLVTNTDKGF YLPNKFWLER LDSGDPEEEA 
RLSALFNKFS MRIDDEIDRV NRKLLRVNSE ETPEGLFKYG ISDTALMAAD ATWSSKESFD 
EFIDAVFSIF WEGTQRNLVM VRAALTSYVL AEFIDSLNAL AQDIATDGFS QRLPDLEHAI 
TMVQTETRAA VERVASWFTL SSNNEYQDFD LAIAFQAGMN TVRTYFRNLS IQEDYASNGE 
IIMNGWCLPI FARLFFLILD NAATHGARNR SHLKISMFVE VRENHLFIKA TNDLPVDHNN 
AELAERAAEI NRDYGQARAM ELLSEEGGSG YPKIWKLLKT DLRKNHDLFV SVSKNEFGVE 
ILLPTAGIVN ETVDSRG