| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6439 |
|---|
| Symbol | |
|---|
| ID | 5320742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009622 |
|---|
| Strand | + |
|---|
| Start bp | 92635 |
|---|
| End bp | 93789 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640778009 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001314941 |
|---|
| Protein GI | 150378347 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.809326 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC AACAAGCAAC TTTCGTTCGT GCTTCGATGA TCGAAGCCTC GCCAGCCCCT
TCGCTTGAAA GAGGTGCTGC CTCCTGGCTG CGGCGAAATC TCTTCGCCAC GCCGAAGGAC
AGCGTTCTGA CGATCATCAG CCTGCTTATA CTGACGTGGC TGGTGCCCCC CGCAATCCAA
TGGCTCTTCA TCGATGCCGC CTGGAGCGGC GGTGGCCGGG GCGTTTGCGC AACGCTGTCG
CAGGGCGGTT CGCAGCCGGA AGGCTGGAGC GGCGCATGCT GGGCGTTCGT CAATGCGAAA
TTCGCCCAGT TCCTTTTCGG CCGCTATCCG CTCGACGAGC GCTGGCGTCC TGCGCTGGTC
GGCATTCTTT TCGTCCTGCT CCTCGTGCCT ATGCTGATAC CCAGGATCCC ATACAAGGGA
CTGAACGCGC TTCTACTGCT GGGCGCCCTG CCCGTCCTCG CGGCGATCCT GCTCCCCGGC
GGCTGGTTCG GCCTTACCTA TGTCGAAACG CCGCTCTGGG GCGGCCTGAT GGTCACCCTG
GTACTGTCCT TCGTCGGAAT AGCCGTTTCG CTGCCGCTCG GCATTCTGCT GGCGCTCGGA
CGCCGGTCGA ACATGCCGGT CATAAAAATG CTCTGCACGG CCTTCATCGA GGTCATCCGC
GGCGTTCCGC TGATCACCGT GCTTTTCATG GCAAGCGTGA TGCTGCCGCT TTTCCTGCCG
CAGGGCGTCA CCTTCGACAA GTTCCTGCGG GCCCTGATAG GCGTGTCGCT CTTCGCCTCC
GCCTATATGG CGGAAGTGGT GCGCGGTGGC TTGCAGGCCA TCCCGAAAGG CCAGTATGAA
GGCGCCGATT CACTGGGCCT CAGCTATTGG CAGAAAATGG GCTTCATCGT CCTGCCGCAG
GCACTCAAGC TGGTTATCCC CGGCATCGTC AATACGTTCA TAGGCCTCTT CAAAGACACA
TCGCTCGTAT CGATTATCGG CATGTTCGAC CTGCTCGGCA TCGTTCGCCT GAACTTCAGC
GACACCAACT GGGCAAGCGC CGTCACGCCG CTGACCGGCC TGATCTTCGC GGGCTTCGTC
TTTTGGCTTT TCTGCTTCGG CATGTCGCGC TATTCAGGCT TCATGGAACG CCTGCTCGAC
AGAAGCCAGC GGTAA
|
|---|
| Protein sequence | MSTQQATFVR ASMIEASPAP SLERGAASWL RRNLFATPKD SVLTIISLLI LTWLVPPAIQ
WLFIDAAWSG GGRGVCATLS QGGSQPEGWS GACWAFVNAK FAQFLFGRYP LDERWRPALV
GILFVLLLVP MLIPRIPYKG LNALLLLGAL PVLAAILLPG GWFGLTYVET PLWGGLMVTL
VLSFVGIAVS LPLGILLALG RRSNMPVIKM LCTAFIEVIR GVPLITVLFM ASVMLPLFLP
QGVTFDKFLR ALIGVSLFAS AYMAEVVRGG LQAIPKGQYE GADSLGLSYW QKMGFIVLPQ
ALKLVIPGIV NTFIGLFKDT SLVSIIGMFD LLGIVRLNFS DTNWASAVTP LTGLIFAGFV
FWLFCFGMSR YSGFMERLLD RSQR
|
|---|
| |