Gene Smed_6410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6410 
Symbol 
ID5320713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009622 
Strand
Start bp70417 
End bp70953 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content59% 
IMG OID640777990 
Productsuccinoglycan biosynthesis protein ExoI-like protein 
Protein accessionYP_001314922 
Protein GI150378328 
COG category[L] Replication, recombination and repair 
COG ID[COG1525] Micrococcal nuclease (thermonuclease) homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAGGG CTCTTTCCCT TCTGTTGGCT CTCCTGCCGA CATCCGTATC CGCAGCGCCC 
GCAGGCTATT TCGATCTTCT TCCTGGCGTC ACCCTGGAAA CGGGCGACAC GTGGGTTTCC
AATGGTGAAA GATTCCGCCT CTATGGCGTA CAGTCCTGTT TGCGCGGCAC TGCCTATACG
GACAAGCACG GGCAGAAACG CGACTGCGGT GAGGCGTCCC TTGCCGTGCT GGCGGCCTAT
ATCAAAGACA CCAAACCTGT TTGCGCCCCG GTGGTGAAGA AAGACGGTAT CGCTTACGCC
GTCTGCTACG CCACAGTTGG GGAGCAGCGG CTTGATCTGG CAAACGTCCT GATCACGAGC
GGATACGCCT TCGCGGCCCT CAACGGTGAG GGCATGCCCT ATCACGTCCC CTATGCCGTG
GCTGAGAAAC TTGCACGCGA TAAGCGTGCC GGCCTCTGGC AGTTCGAAGA CGTCCAGCAT
CCGGCCATTC TCTTGAGCCG CGAGGTGAAT GCGCGAACCA AGAAGGCAGA TCAATGA
 
Protein sequence
MRRALSLLLA LLPTSVSAAP AGYFDLLPGV TLETGDTWVS NGERFRLYGV QSCLRGTAYT 
DKHGQKRDCG EASLAVLAAY IKDTKPVCAP VVKKDGIAYA VCYATVGEQR LDLANVLITS
GYAFAALNGE GMPYHVPYAV AEKLARDKRA GLWQFEDVQH PAILLSREVN ARTKKADQ