| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6296 |
|---|
| Symbol | |
|---|
| ID | 5320598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 1212837 |
|---|
| End bp | 1214345 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640777895 |
|---|
| Product | UbiD family decarboxylase |
|---|
| Protein accession | YP_001314827 |
|---|
| Protein GI | 150378232 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATCGCA GCGATCAAGT CACCCGCCGC TTTTCCGACC TCCAGGACTT CGCCGCCATG
CTCGAGCGGC GGGGCCGCTT GCGCCGCATC TCGCGGCCCG TTTCGCTCGT GCATGAGGTC
ACCGAGATCC ACCGGCGCGT GCTCATCGCG GGCGGGCCAG CCCTGCTGTT CGAGAAGCCG
GTCGACGCCT CCGGCCGCGT ATGCGACATT CCGCTTCTCG CCAATCTGTT CGGCACGCTC
GAGCGGATAG AGTGGGGTTT CGGGCTACCC GCAGGCGGGC TTCCGGGCCT TGCGAAAATG
CTGGCGGAAC TGCGGGAACC GAGATCGCCG CAATCGCTGT CGGACGCCTG GGGTAAGCTG
CCACTGCTGA AGGCGGCGCT GGCGATGCGG CCACGAAGCT TCGCGCGCCC GCCGGCGCAG
GAGACCGTGT GGCGCGGCGC CGAGGCCGAC CTTTCGCGGC TGCCGATCCA GTGGTGCTGG
CCGGGCGAGC CGGCGCCGCT CGTCACGTGG CCGCTGGTGA TCACCCGTGC GCCGGACGAT
CCGAGCGACA TCAATGTCGG CATTTATCGG ATGCAGGTAC TCGGACCGAA CCGGCTCGTC
CTGCGCTGGC TGGCGCATCG CGGCGGCGCG CGGCACCATC GCATGTGGCA GCAGCGCGGT
GAAGACATGC CGGTGGCAGT CGCGATTGGC GCCGATCCGG CAACGATCCT CGCCGCGGTG
ATGCCGCTGC CGGAAGGCAT CAGCGAGCTT GCCTTCGCCG GGCTCCTGAA GGCGGAGCGG
CAGCCGGTCG CGCAGGCGGT GACGGTGCCT CTGTCTGTTC CCGCGAATGA TGAGCTTGTC
CTCGAGGGGT TCGTCTCGGC AGACGAGACC GCCGAAGAAG GGCCCTATGG CGACCACACT
GGGTACTACA ACTCCGTCGA ACGTTTTCCG GTGATGTCGC TATCGGCGAT CACCATGCGC
CGCAGGCCAT TCTATCTCTC GACCTTTACC GGCCGCCCGC CCGACGAGCC GTCGAAGCTA
GGGGAGGCCC TGATGGAGCT TTTCCTGCCG CTGGTGAGGC GGCAGTTCCC GGAAATAATT
GATCTATACC TGCCCCCCGA GGCCTGCTCA TATCGTGCAA TGGTCGTGTC CATCGACAAG
CGCTACCCCG GTCAGACGAA GCGTATCATG ATGGGGCTCT GGTCGATGCT GCCGCAGTTC
AACTATACGA AGCTCATCGT CGCGGTCGAC CCCGACATCA ACGTCAGGAA CTGGAGCGAC
GTCATCTGGG CGCTGTCGAC CCGGTTCGAC GCCAGCCGGG ACGTAACCAT CCTGAACGAC
ACGCCGATAG ACTATCTCGA TTTCGCGTCT CCGAAGCCGG GGCTCGGCGG CAAGCTCGGA
CTCGACGCGA CGCGCAAACT CGGGCCGGAG ACGGAGCGCG AATGGGGACG CGTGCTTGCT
ATGCCGGCGG AAGTTGTCGG GAAGGTCGAT CAATTTTGGA CAGAACTGGG CCTGGGAGAA
GCGCTATGA
|
|---|
| Protein sequence | MYRSDQVTRR FSDLQDFAAM LERRGRLRRI SRPVSLVHEV TEIHRRVLIA GGPALLFEKP
VDASGRVCDI PLLANLFGTL ERIEWGFGLP AGGLPGLAKM LAELREPRSP QSLSDAWGKL
PLLKAALAMR PRSFARPPAQ ETVWRGAEAD LSRLPIQWCW PGEPAPLVTW PLVITRAPDD
PSDINVGIYR MQVLGPNRLV LRWLAHRGGA RHHRMWQQRG EDMPVAVAIG ADPATILAAV
MPLPEGISEL AFAGLLKAER QPVAQAVTVP LSVPANDELV LEGFVSADET AEEGPYGDHT
GYYNSVERFP VMSLSAITMR RRPFYLSTFT GRPPDEPSKL GEALMELFLP LVRRQFPEII
DLYLPPEACS YRAMVVSIDK RYPGQTKRIM MGLWSMLPQF NYTKLIVAVD PDINVRNWSD
VIWALSTRFD ASRDVTILND TPIDYLDFAS PKPGLGGKLG LDATRKLGPE TEREWGRVLA
MPAEVVGKVD QFWTELGLGE AL
|
|---|
| |