Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6274 |
Symbol | |
ID | 5320576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 1192563 |
End bp | 1194167 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640777873 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_001314805 |
Protein GI | 150378210 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.311499 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCTATG GGATAGCCGA GATGCGGTGG GCCGTATCCG ACGCTGGGTG CAGCAGTAAT ACATCATCGT CTCCGGTGGA TAACGGAATG CATGCAGAAA GCGTTGTTGA GAGGACGAGG CTCGGGCAGA AGCTCGTCCG GTGGCGAGGC GACGGGATCT CGGCCTATGT TCTCGGGACT GTAGCTGTCT TAAACATTCT TGCCATTAGA CTCGCATTTC GGGAACTCTT CGGCGACAGC TTTCTGCTCT TGTCGCTTAC CCCTGCCGTT CTCGTGGTCG CGATGGTCGG CGGGCTGAAA CCGATCACCT TCGCAGCAGG GCTTTCGCTT CTTGCAGCAT CATCTCTTCG TTGGATAGAG AACCCGTTCG AGCCGACAAT CGGCGAGCTG ATCGCCTTCG GCTCGACACT GCTCCTGATC GTGGCTCTGG GAGAAGTGCT TCAGGCGGCA AGACGCGCCA TCGACCGGAC CGAGGGTGTC GTAAGAGCCC GCGACGCGCA TCTGAGATCC ATACTGGATA CTGTTCCGGA TGCCACAGTG GTCAGCGCTA CCGACGGCAC AATCGTATCC TTCAACGCCG CGGCCGTCCG GCAGTTCGGA TACGCTGAGG AGGAGGTCAT CGGCCAGAAC CTGCGCATAT TGATGCCGGA ACCCTACCGC CACGAACACG ACGGATATCT GCAGCGCTAC ATGGCAACCG GGGAAAAGCG CATCATCGGT ATCGATCGCG TTGTCTCGGG GCAGCGGAAG GATGGATCGA CGTTTCCGAT GAAGCTCGCC GTGGGGGAGA TGCGCTCGGG CGGCGAGAGG TTCTTCACAG GCTTCATCAG AGACCTTACG GAGCGGGAGG AGTCTGCCGC ACGGCTCGAG CAGATACAGG ATGAACTGGC GCGCCTTGCC CGCCTAAACG AGATGGGCGA AATGGCTTCG ACGCTTGCCC ACGAACTGAA CCAGCCGTTG TCGGCGATCG CCAACTATTC GCATGGCTGT ACGAGGCTGT TGCGTGACAT GGACGACGCC GTCGCTACGC GAATGCGAGA GGCGCTCGAA GAGGTGGCGA GCCAGTCGCT GCGGGCCGGC CAGATCATCA AACATCTGAG GGAATTCGTC ACCAACGGCG AGACGGAGAA GGCTCCGGAA GACATTCGCA AGCTGGTCGG GGAGTCTGCG GCCCTGGCTC TGGTCGGTTC GCGCGAGCAG GGCGTCCGCA CCGTATTCGA GTATCTGCCC GATGCCGAAA TGGTAATGGT CGACCGGATC CAGGTGCAGC AGGTCCTCAT CAATCTGATG CGCAACGCGA TAGAGGCGAT GCGCCACGTC GACCGCCGGG AGCTGACGAT CCGCACGATG CCGGCCGATC CGGGCGAGAT AGCAGTCGTC GTTGAAGACT CCGGCGGAGG CATTCCGGAA GAAGTCGCCG GTCAGCTCTT CAAGCCGTTC GTCACGACCA AGGCAAGCGG AATGGGCATC GGACTGTCCA TTTCGAAGCG GATCGTCGAG GCGCATGGCG GTGAGATGAC TGTCTCGAAA AATGCAGCCG GCGGGGCCAC TTTCCGGTTC ACGCTTCCCG CCTATCTAGA AGAACGGATC GTTGCAAATG ACTGA
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Protein sequence | MVYGIAEMRW AVSDAGCSSN TSSSPVDNGM HAESVVERTR LGQKLVRWRG DGISAYVLGT VAVLNILAIR LAFRELFGDS FLLLSLTPAV LVVAMVGGLK PITFAAGLSL LAASSLRWIE NPFEPTIGEL IAFGSTLLLI VALGEVLQAA RRAIDRTEGV VRARDAHLRS ILDTVPDATV VSATDGTIVS FNAAAVRQFG YAEEEVIGQN LRILMPEPYR HEHDGYLQRY MATGEKRIIG IDRVVSGQRK DGSTFPMKLA VGEMRSGGER FFTGFIRDLT EREESAARLE QIQDELARLA RLNEMGEMAS TLAHELNQPL SAIANYSHGC TRLLRDMDDA VATRMREALE EVASQSLRAG QIIKHLREFV TNGETEKAPE DIRKLVGESA ALALVGSREQ GVRTVFEYLP DAEMVMVDRI QVQQVLINLM RNAIEAMRHV DRRELTIRTM PADPGEIAVV VEDSGGGIPE EVAGQLFKPF VTTKASGMGI GLSISKRIVE AHGGEMTVSK NAAGGATFRF TLPAYLEERI VAND
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