Gene Smed_6221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6221 
Symbol 
ID5320523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp1140378 
End bp1140875 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content55% 
IMG OID640777826 
Productnitrogen fixation protein NifX 
Protein accessionYP_001314758 
Protein GI150378163 
COG category 
COG ID 
TIGRFAM ID[TIGR02663] nitrogen fixation protein NifX 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.550036 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCTCCA TTCGTCGTCT CTCGCTCGTC AGCAATCAGT CCCAGAGAGA GATTTCGGAC 
CGGCCGTTAG GCGCATTGCG CATTGCGATT GCTACTGAAG ATATCAAAGG GCTGAACGCA
CATTTCGGGT CGGCCAAGCG TTTTGCCATC TACGACGTGA CAGCTCACAA GTCGCAGTTC
ATGGAAGCCA TCGAGTTCGA TAACGCTTCG GACGAGAGCG GAAGGCATCG CACTGAAGGT
GACGGCCGCA TCCGGTCGAG GGTGTCCGCG TTGAAGGGCT GCCAGCTTTT ATTTTGTCTC
GCCATCGGGG GTCCTTCGGC CGCCAAGGTA ATTTCCGCAA AGATTCATCC CATCAAAGCA
CAGCAGGCTG TCTCCATGAG CCAAGTATTG TCGAGCGTCC AGACAATGCT CCAGACGGCT
CCTCCACCTT GGCTGCGTAA AATGTTGGCG GATGCAGGTG CAGCTAAAAA GAGAGCCGAC
TTTGAGGACG AGGACTGA
 
Protein sequence
MISIRRLSLV SNQSQREISD RPLGALRIAI ATEDIKGLNA HFGSAKRFAI YDVTAHKSQF 
MEAIEFDNAS DESGRHRTEG DGRIRSRVSA LKGCQLLFCL AIGGPSAAKV ISAKIHPIKA
QQAVSMSQVL SSVQTMLQTA PPPWLRKMLA DAGAAKKRAD FEDED