Gene Smed_6185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_6185 
Symbol 
ID5320487 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp1107713 
End bp1108366 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content58% 
IMG OID640777803 
Productpolysaccharide deacetylase 
Protein accessionYP_001314735 
Protein GI150378140 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.307071 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCACC TCGATTATAT ACACGAGGTG CCGAGCAACT GCGATTACGG GACCGAAGAT 
CCTAGTATAT ACCTGACGTT TGACGACGGC CCGAATCCAC ATTGCACACC GGAAATCCTG
GATGTGCTGG CTGAGTACGG CGTACCGGCG ACTTTCTTCG TCATCGGCAC CTATGCGAAA
AGCCAGCCGG AACTCATTCG ACGTATCGTC GCGGAAGGTC ACGAAGTGGC TAACCACACG
ATGACCCACC CGGACCTGTC AACATGCGGA CCTCACGAAG TCGAACGTGA GATTGTCGAG
GCAAGTGAGG CCATTATCGC CGCTTGTCCT CAGGCAGCGG TCCGACACAT ACGAGCACCT
TATGGTGTCT GGAGCGAGGA AGCGCTGACA AGATCGGCGA GCGCTGGGCT GACGGCAATA
CATTGGTCGG CAGATCCGCG AGATTGGTCT CGGCCAGGCG CCAACGCGAT TGTTGATGCA
GTGCTGGCAT CGGTTCGGCC CGGTGCGATC GTGCTGTTGC ACGATGGATG CCCTCCCGAC
GAAACGGGAG CGCTTACGGG TCTGCGTGAC CAAACGCTTA TGGCAATTTC CCGTGTGATC
CCGGCGCTGC ACGAGCGTGG TTTTGCAATT CGCCCACTTC CTCCGCATCA CTGA
 
Protein sequence
MKHLDYIHEV PSNCDYGTED PSIYLTFDDG PNPHCTPEIL DVLAEYGVPA TFFVIGTYAK 
SQPELIRRIV AEGHEVANHT MTHPDLSTCG PHEVEREIVE ASEAIIAACP QAAVRHIRAP
YGVWSEEALT RSASAGLTAI HWSADPRDWS RPGANAIVDA VLASVRPGAI VLLHDGCPPD
ETGALTGLRD QTLMAISRVI PALHERGFAI RPLPPHH