| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6162 |
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| Symbol | |
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| ID | 5320464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 1086273 |
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| End bp | 1086980 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640777789 |
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| Product | type IV secretion system lytic transglycosylase VirB1 |
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| Protein accession | YP_001314721 |
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| Protein GI | 150378126 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.151768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAACG CAGCTTTGCC CTTGGCTGTC GCCATCTTGG CCTCGATGTG CGTATCGAGC
AACGCCGCGC CAATCTCCTT GCGTGAGTTC GAGCGCCTTG CACGCGGATG CGCGCCGCAG
GTAAATCCGT CTACGCTTGC CGCAATCGCC AAGGTTGAAA GCGGCTTTGA TCCGCTTGCG
GCACATGACA ACACCACCGG AGAGAGCCTT CACTGGAACG ATCAAACGCA AGCGCGCCAG
AGCGTCAGAG CCCGCCTCGA GGCACAACAT TCAATCGACG TTGGGCTTAT GCAGATCAAC
AGTAAGAACT TTTCCGTCCT CAATCTCACG ATAGAAAAGG CCTTTCAGCC CTGTATTTCA
CTTGTGGCCG CGGCGCACTT GCTTGAAAGC CGCTATGCCG GCGGCGACAC TGCCGCAGAA
AAGCAGTTGG CGCTTCGCCA GGCAATCTCG GCCTACAACA CGGGTGACCT GACGCGCGGA
TTTGCGAACG GTTATGTGCA GAAGGTTGAG TCAGCCGCTC GAGAGATCGT GCCACCGCTG
GTCGGATGTC CGGAAAAGGC TGATGAAAAG CCGATCTCGG AAAAAATATG GGATGTGTGG
GGTTCGTTAG AGCCAGACTT ATCGGCAGGC GATCTCATCA GCCTCCCCGC ACTCCAGAAG
CCTGGAGACC ATGAACATCT CGAAAAACAA CATATTATAT TCGATTAA
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| Protein sequence | MLNAALPLAV AILASMCVSS NAAPISLREF ERLARGCAPQ VNPSTLAAIA KVESGFDPLA
AHDNTTGESL HWNDQTQARQ SVRARLEAQH SIDVGLMQIN SKNFSVLNLT IEKAFQPCIS
LVAAAHLLES RYAGGDTAAE KQLALRQAIS AYNTGDLTRG FANGYVQKVE SAAREIVPPL
VGCPEKADEK PISEKIWDVW GSLEPDLSAG DLISLPALQK PGDHEHLEKQ HIIFD
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