| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5992 |
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| Symbol | |
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| ID | 5320294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 949743 |
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| End bp | 951398 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640777668 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001314600 |
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| Protein GI | 150378005 |
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| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0792937 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGAGA AATACACCGT GGGCCAATAT CTAGTCGACA GACTTCATGA GTTGGGTCTG
CGGCACCTGT TTTCCATAGC GGGCGATTAT TCGATCGAAT GGGTGAACAG TTATGTAGAG
AAAAGCGGTA TCCAGGTGAT AGAAGAGGTG AATGAACTGA ATGCCGGCTA TGCGGCTGAC
GGCTATGCGA GGCTGAAAGG AATTGGTGCA CTGTGCGTTA CCTATTCCGC AGGCTCGCTT
TGCGCAACGA ATGCGATCGC CGGATCTTAC GTCGAGAAGG TGCCGGTTGT TCTGATCAAC
GGTGCGCCAA GCATCAAGAA AACGCTCACG TTCGAACAAA CCGGCTATAG TTCGCATCAC
TTCATTAGTG GACGGGAAAC GGATCGTCAG GTGTTCGAAT ACATTACGGC CGCTGCAGTC
CGCATCGACA GCCCTGATCT CGCACCAATG CTCATAGATT ATGCGCTGAC GCAGTGCATC
ACGGAAAGGC GTCCGGTCTA TATCGAGTTG CTAGAGGATA TGGTGGACCT AGGATGCACA
GTTCCGTCAG GTGCACTAAA AGCGGCCCCG GTTATATCCG ACGAAGTTAG TCTAAATCAG
TCGATCGCGC AAATCAGCGA AAGACTGCAA AATGCTACCA GACCCCTGAT CTGGATCGGT
GTCGAGGTGG ACCGGTTTGG CCTTCACGAC CAGGCGGAGC GGCTTATCCA GGACCTGAAA
ATTCCCTACG TGACCGAGCT TTTGAGCAAG GCCATCCTGC CGGAAGACGA TGCACAATTT
GCCGGGGTGT TTGACGGCAA ATCGTCATCC CCCTACGTCC AGTCTTTGGT CGAAAGCTCC
GATTTCGTAT TGGCCCTAGG TGTCTGGTTG ACGGACATCA ATGATTTGGG CTGGCCCATC
GATCTCAATA AAACAGCCTT CGCTTCCTGG AATACACTGA AATATGGCAC AAGTTTCATC
GCACAGGTTT CGCTCGCGGA CCTCGTGGAC GGCTTGATTG ATAAAAGGGT AACGTGCAAA
GACCGAATTC TTCCAGCGAA TACCGTCCAG CAAGCGCCCG TCATGAATCC GGCAGACGAA
CTTACGTATC AGGGCTTCTA CGATTTCATC CAGAGCCAGG TCGACGAAGA TACCATCGTC
GGCGCCGACG CGAGCTTAAA TTATTTCGGG AGCATGCTTC TCAAAGTGGG TGCTCGCCGC
GGTTTCATCG TTCAATCATC CTATTCGGCG ATCGGCTATA TTGGGCCGGC CGCGACAGGG
TTATCTCTGG CGAAGCAAGA TGGCCAGAGA CTGATGGTCC TATCGGGGGA TGGCGGGTTT
CAAATGACCG CTCAATGCCT GTCCACACAA ACCCGTTTCA ATCTCAATCC GATCATCTTC
GTGACAGACA ACGGTGTCTA TGGCGTGGAG CAATGGCTTG CCGATGCTTC GGTTTTCCAT
GGTAGCAAGC CGTTCTATAA TTCATGCATC CTGCACCGAT GGAATTACAG CAAGTTGGCA
GAAGTCTTTG GCTGCCAAGG CTGGAAGGTG CACACCTATG GCGAACTGGA GGAAGCTATA
AATGGCGCCA AGGACAACCT AAACAGTCCG TCCATCATCC AGGTTGTCGT GCCACAGCGG
TCGATCCCCG ACAATGCGAA CTGGAAAGCA AACTAG
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| Protein sequence | MREKYTVGQY LVDRLHELGL RHLFSIAGDY SIEWVNSYVE KSGIQVIEEV NELNAGYAAD
GYARLKGIGA LCVTYSAGSL CATNAIAGSY VEKVPVVLIN GAPSIKKTLT FEQTGYSSHH
FISGRETDRQ VFEYITAAAV RIDSPDLAPM LIDYALTQCI TERRPVYIEL LEDMVDLGCT
VPSGALKAAP VISDEVSLNQ SIAQISERLQ NATRPLIWIG VEVDRFGLHD QAERLIQDLK
IPYVTELLSK AILPEDDAQF AGVFDGKSSS PYVQSLVESS DFVLALGVWL TDINDLGWPI
DLNKTAFASW NTLKYGTSFI AQVSLADLVD GLIDKRVTCK DRILPANTVQ QAPVMNPADE
LTYQGFYDFI QSQVDEDTIV GADASLNYFG SMLLKVGARR GFIVQSSYSA IGYIGPAATG
LSLAKQDGQR LMVLSGDGGF QMTAQCLSTQ TRFNLNPIIF VTDNGVYGVE QWLADASVFH
GSKPFYNSCI LHRWNYSKLA EVFGCQGWKV HTYGELEEAI NGAKDNLNSP SIIQVVVPQR
SIPDNANWKA N
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