| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5986 |
|---|
| Symbol | |
|---|
| ID | 5320288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 942790 |
|---|
| End bp | 944661 |
|---|
| Gene Length | 1872 bp |
|---|
| Protein Length | 623 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640777662 |
|---|
| Product | putative dehydrogenase large subunit protein |
|---|
| Protein accession | YP_001314594 |
|---|
| Protein GI | 150377999 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.420299 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTTTTC CCGTCGAATC GGCGCTGAAA GCCGATGCCA ACACCGTCGC AGCGACCGCC
GACTACGATA TCGTGATCGT CGGAACAGGC ATTTCCGGAG CAATCATCGC CAAGCAGGCT
GCGGAAGCGG GCAAGCGTGT CCTCATCCTA GAAGCCGGAA CCGGTGCCAA TAGAACTCTG
GCCGGCTATG ACGATCTGCT GACCACCTTC TATTTGGCAG CCGGCAAGGA TAACCAGTCG
CCCTTCCCGC TGAATGCCAA CGCGGCCATA CCCCGCAGCC CGCAGCTTCG AAAGCTGCAG
GCGGGGGAAA CCGATAGCTC GACGTACATC GTTCAATCCG GCCCTTATGT CAGTGATACG
ACATATACCC GAATTTTCGG CGGAACGACG ATGCACTGGG AGGCGAAAAC CCCGCGCATG
CTTCGCTCGG ATTTCCAGGC ACGCACCATT TTCGGCCAGG GGCTGGACTG GCCACTGAGC
TTTGAGGAAA TCGAGGATGA CTACCGTCTG GCCGAGCGGG AAATAGGCGT ATCGGCGAAC
GTTGAAGACC AGCAATATCT GGGGCAGACC TTCCCGGACG GCTACGTCTT CCCGATGCGC
GGCCTGCCGC TGTCCTACCT GGACCAGCAG GTCAACAAGG GTATCGAAGG CACCAGTGTC
GAGCTTTACG GCGAGACCTA TCCCCTGAAG GTCAGGCCCT ATCCCCAGGG GCGCAACAGC
ATACCAAACC CGGCCTATGA TGGTGGGAAG GGTTATCGTC CAATTGGCGC CGTTAATACG
CATCAGGTCG AAGAGGGTGG TCGCTGCCAG GGTAACACCA ACTGCGTCCC GCTCTGTACT
GTGCAAGCGC GCTACCACTC CGGCAAAACG CTTGCCAAGG CGTTCGCGGT AAACGGGGAA
AGGCGCACGC CGCTTGTTGA ATTCTTGCCG CAGGCGGTCG CATCGAAGGT CAACATTGAT
CCGGACAGCG GGAAAGTGCG GTCTCTGGAG GTGAAGGTTT ACAAAGACCC GGCCTCACCC
GCCTACGAGA CCTTCACCGT GAAGGGCAAG GTTTTCGTGC TTGCGGCAGG CGCCATTGAA
ACGGCGCGTC TCATGCTGGC CTCCGGCCTG CGCAGCACCA GCGGCCTTGT CGGACGCAAT
CTGATGGACC ACGCCTATCT GCTGAATTGG GCGCTGATGC CGCAAATCTG CGGTACGATG
CGCGGAACGA GTTCGACGGG CGGTATCGTG GACCTACGGG ACGGTCCTTT CCGTGAGAGG
CAGGCCGCCT TCGCCATTGA TATCCATAAC GACGGCTGGG GCTGGGCCAC GGGCGCGCCG
ACCTCGGACC TTCTCGAACT GGTGGATGAT CGCAACCTGC ACGGGGGGGA TCTTCGGCGC
GGCGTGATCG ACCGGGTTTC GCGGCAGTTG CTGCTGGCAT TCATGATCGA GGTCATGCCG
GTCGAAAGCA ATCGCATCGA GGTGGACCCG AAGTATAGGG ACGCGTTGGA CAATATGCGG
CCCATCCTGT CCTTCACGGT TCCGGAATAT ACCATGAAGG GTGCCGCGTA TGCCCGCCAG
TTTTCGCGCA CCGTGTTTGC GCGTATGGGC GCGCAGGACC ACACCCATTA CGACCCAAGC
GATTTCGGCT ATGTCGCCTA TGACAAGCAA GGCTATGCAA TCCGAGGCGG CAATCATCTG
GCCGGCACCC ATATCATGGG AACGACGAAG ACCAACTCCG TTGTGGACAA GAACCAGCGC
AGCTGGGACC ACGAAAACCT TTATCTCGTG GGCGGCGGCA GCATGCCGAC GATCGGCACG
GCCAATGTCA CGTTGACGCT GGCCGCCATG TGCTTCCGAA GCAGCCGCGA CATTCTAAAG
TCACTGCATT GA
|
|---|
| Protein sequence | MLFPVESALK ADANTVAATA DYDIVIVGTG ISGAIIAKQA AEAGKRVLIL EAGTGANRTL
AGYDDLLTTF YLAAGKDNQS PFPLNANAAI PRSPQLRKLQ AGETDSSTYI VQSGPYVSDT
TYTRIFGGTT MHWEAKTPRM LRSDFQARTI FGQGLDWPLS FEEIEDDYRL AEREIGVSAN
VEDQQYLGQT FPDGYVFPMR GLPLSYLDQQ VNKGIEGTSV ELYGETYPLK VRPYPQGRNS
IPNPAYDGGK GYRPIGAVNT HQVEEGGRCQ GNTNCVPLCT VQARYHSGKT LAKAFAVNGE
RRTPLVEFLP QAVASKVNID PDSGKVRSLE VKVYKDPASP AYETFTVKGK VFVLAAGAIE
TARLMLASGL RSTSGLVGRN LMDHAYLLNW ALMPQICGTM RGTSSTGGIV DLRDGPFRER
QAAFAIDIHN DGWGWATGAP TSDLLELVDD RNLHGGDLRR GVIDRVSRQL LLAFMIEVMP
VESNRIEVDP KYRDALDNMR PILSFTVPEY TMKGAAYARQ FSRTVFARMG AQDHTHYDPS
DFGYVAYDKQ GYAIRGGNHL AGTHIMGTTK TNSVVDKNQR SWDHENLYLV GGGSMPTIGT
ANVTLTLAAM CFRSSRDILK SLH
|
|---|
| |