Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5867 |
Symbol | |
ID | 5320169 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 828824 |
End bp | 829711 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640777562 |
Product | xylose isomerase domain-containing protein |
Protein accession | YP_001314494 |
Protein GI | 150377899 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.102013 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCTTT CGACGCACAA CTGGATGCGA GCAGAGCCAC TCGCCGTGAC GCTGAAGCGC ATTAAAAAAT ATGGCTACGA GAGCATCGAA ATTTCGGGTG AGCCGGCCCA ATACGACATC AAGGACACTC GCGCGCTGCT TAAGGAACAC GGCATCCGTT GTTGGGGCGC GGTGACACTA ACCTTGGGCG AGCGCAATCT CGCAGCCAAG GACGAGAGTC AGCGCGCAAA GTCGGTGGAC TACGTAAAGA GTGTCATCAC AATGGTGAGT GAACTCGAAG GCGAAATCGT TACCCTCGTG CCGGCAACTG TCGGCAAGCT CATTCCGGAT GCCACCGAGG AGGAGGAGTG GACGTGGGTT GTTGATGCGA CGAAGGAATG CTTCGCCCAC GCGCAGAAAA AAGGCGTCCG GCTGGCGGTC GAGCCGCTCA ACCGTTTCGA GACATACCTC TTCAATCGTG CTGCCCAAGC GCTTGCGCTC GCCGACGCAG TCAGTCCCGA GTGCGGTGTC TGCCTTGATG CCTTCCACCT AAATATCGAG GAGGAGGACA TATACGATGC AATCAGACTC GCCGGAAATC GACTTTTGGA CTTCCACGTG GCAGATAACA ACCGCTTTGC GGCAGGTCTG GGTCATCTTG ACTGGCCGAA GATCGTCGCC ACTCTGAAAG AGATCGGATA CGATGGTGCG CTCACGAATG AGTTCGTGGC ACCGGTAGAT CGCACGCCGG CCGCCAAATA TCCCGACATG GTAGAGCGCA CTCCGGTTGA TATCCCGCCG GAGCAGCTCA AGTTCATCCA GGATCATGGA TCGAGCTTGC TCACTGAGAA GTTCTACGAC GACCAGATGC GGATCACAGC AGAGACCATA CTGCCGCTGA TCAAGTGA
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Protein sequence | MHLSTHNWMR AEPLAVTLKR IKKYGYESIE ISGEPAQYDI KDTRALLKEH GIRCWGAVTL TLGERNLAAK DESQRAKSVD YVKSVITMVS ELEGEIVTLV PATVGKLIPD ATEEEEWTWV VDATKECFAH AQKKGVRLAV EPLNRFETYL FNRAAQALAL ADAVSPECGV CLDAFHLNIE EEDIYDAIRL AGNRLLDFHV ADNNRFAAGL GHLDWPKIVA TLKEIGYDGA LTNEFVAPVD RTPAAKYPDM VERTPVDIPP EQLKFIQDHG SSLLTEKFYD DQMRITAETI LPLIK
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