Gene Smed_5856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5856 
Symbol 
ID5320158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp817766 
End bp818962 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content62% 
IMG OID640777551 
Producthypothetical protein 
Protein accessionYP_001314483 
Protein GI150377888 
COG category[S] Function unknown 
COG ID[COG5441] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.973654 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCGCA TCTACATCGT AGGCACGGCC GACACGAAGG GGGAGGAACT CACTTATCTG 
GCGGCGCGGG TCGAGGCCGC CGGCGGCCGG CCCGTTCGCG TCGATGTCGG CACGCGTCGC
CCCACGGTTG CGGTGGACAT CTCAGCCGAG ACAGTGGCGG CCGCGCATCC TGACGGCGTT
GCAGCAGTGC TTTCCGGCGA TGACCGGGGG AAGGCGGTCG CTGCAATGGG TGAGGCCTTC
GCGCGCTTCC TTCCTAAATG CGACGATGTC GCCGGCGTGG TAGGCATTGG TGGTGGGGGC
GGCACATTAA TCATCACTGC GGGCATGCGC GGATTGCCAC TCGGTCTGCC GAAGCTCATG
GTCTCGACGC TCGCGTCCGG CGACGTAGCA CCTTACGTTG ACGTTTCCGA CATTGTCATG
ATGCCATCGG TCACAGACAT GGCCGGGCTC AACCGCATCA GCCGCGTGAT CTTGCAAAAC
GCGGCGGCGG CAATTACGGC AATGGCCAGT CGGCCAACTG AGAAAGCAGC CTCCAAGCCC
GCTCTCGGTC TTACTATGTT TGGCGTGACG ACTCCCTGCG TGACCACCAT TGTCGACAGA
CTGAGGGCGG ATCACGATTG TCTGGTCTTC CACGCCACTG GCGCAGGCGG ACGCACGATG
GAGAAGCTCG CAGATAGCGG GTTTCTTTCA GGCGTGCTCG ACATTACCAC GACAGAGGTT
TGCGACTTTC TCCTTGGTGG CGTCCTTTCG GCAACGCAGG ATCGCTTCGG TGCGATTGCG
CGCACGGGAC TGCCTTATGT CGGCTCCGTC GGTGCGTTGG ATATGGTGAA TTTCTGGGCG
CCCGAAACCG TGCCGGAGCG CTACGCGGGG CGACTTCTCT ATCACCATAA TCCCAACGTC
ACGCTCATGC GTACGACTCC GAGGGAGTGC GCTGCCATCG GAAGATGGAT TGGGGCCAAG
CTCAACCTCT GCAAAGGTGT CGTTCGCTTC CTTATTCCGG AGAAGGGCGT GTCGGCCCTC
GATGTCGAGG GGGGAGCCTT TTTCGATCCG ACAGCAGACG CGGCCCTTTT CGAGGCGCTG
GAAGCGACTG TCGACAGGAC CGAGCGCCGC CGTATCGTCC GTCTTCCGCT TCACATCAAC
GATCCGCAGT TTGCCGAGGC CGCAGTCGCG GCCTACCGAG AAATCGCAAA ACATTGA
 
Protein sequence
MQRIYIVGTA DTKGEELTYL AARVEAAGGR PVRVDVGTRR PTVAVDISAE TVAAAHPDGV 
AAVLSGDDRG KAVAAMGEAF ARFLPKCDDV AGVVGIGGGG GTLIITAGMR GLPLGLPKLM
VSTLASGDVA PYVDVSDIVM MPSVTDMAGL NRISRVILQN AAAAITAMAS RPTEKAASKP
ALGLTMFGVT TPCVTTIVDR LRADHDCLVF HATGAGGRTM EKLADSGFLS GVLDITTTEV
CDFLLGGVLS ATQDRFGAIA RTGLPYVGSV GALDMVNFWA PETVPERYAG RLLYHHNPNV
TLMRTTPREC AAIGRWIGAK LNLCKGVVRF LIPEKGVSAL DVEGGAFFDP TADAALFEAL
EATVDRTERR RIVRLPLHIN DPQFAEAAVA AYREIAKH