Gene Smed_5778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5778 
Symbol 
ID5320080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp751585 
End bp752115 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content57% 
IMG OID640777485 
ProductGCN5-related N-acetyltransferase 
Protein accessionYP_001314417 
Protein GI150377822 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1247] Sortase and related acyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.225657 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0101092 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAGGTCG ATGTGTCGAT TGAAGAAGGG TCGATAATCA GGCGGTTATC AGTCGATGAC 
ATCGACGTTT TTCGCCGCAT ACGTCTGGAG GCGCTTTCAC ACGAACCCTT TTCGTTTGCG
AGCGTATTTG GTGATTGGGT CCATCTCTCC GACCGCGAAT GGCGCCAGCA TCTGGATCAG
CCAGTGTTTG TCGCGTTCCT GAGTGGGCAG CCCGTTGGCA TGATGGGGCT CAGGTTTGAG
CGTGCGAGGA AGATGGCGCA TCGCACGAGG CTTGTCAGCG TCTATGTGCG GAAAGACAAT
CGAAGGACCG GGATCGCGGC AAAGCTTTTG CATGACGTTA CGGAGCATGC ACGAGACCGC
GGAGTTCTGC AGGTGGAGCT TGCGGTGAGT GCGGACAATT CGGCCGCGAT ACGGTTCTAT
CAACGCCACG GTTTCGTAGA GGTTGGCCGC ATCCCAAACG GCTTCCTGGG CCACGGCACC
GAGAACGACG AGTTGATCAT GGTACTGCGC TTGGCTCGCG AGAGGGGATG A
 
Protein sequence
MEVDVSIEEG SIIRRLSVDD IDVFRRIRLE ALSHEPFSFA SVFGDWVHLS DREWRQHLDQ 
PVFVAFLSGQ PVGMMGLRFE RARKMAHRTR LVSVYVRKDN RRTGIAAKLL HDVTEHARDR
GVLQVELAVS ADNSAAIRFY QRHGFVEVGR IPNGFLGHGT ENDELIMVLR LARERG