| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5702 |
|---|
| Symbol | |
|---|
| ID | 5320004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 676143 |
|---|
| End bp | 676661 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640777427 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_001314359 |
|---|
| Protein GI | 150377764 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.456699 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACCCA AACTGCTGGC CATCGGTGGA TGGTTGAGAC GGCGTGCGGA GAATCTTCTC
TGCCTGATGC TTCTGACGAT GTTCATCGTC TTCACGCTGC AGATCATTTT CCGCTATGCG
CTTAATCTTT CCATCGGTTG GACGCACGAA GTCAGCGTCG CCCTTTGGAT ATGGATCGTC
CTATTCGGAT CCGCCTTCGT GGTGCGCGAA GTAGACGAGA TCCGCTTTGA CCTCATCTGG
AGCGGCGCAA GCGACCGATC GCGGCGTGTC ATGCAGATAA TCTGCGCGGC AGCGTTGATC
TTCCTGTTCG GCATCTCGCT GCCGGCGGTC ATCGACTACG TGACTTTCAT GAAGGTGGAG
AGCACGGCCT ACCTGAAGAT CCGCTTCGAC TATCTCTACT CCATCTACGT GATCTTCGCG
ATTTCAATGA TCCTTCGATA TATCTGGCTG GCTATACAGG CTATCCGCGG CAGGGCGCCC
GACGCTTTTG ATCCCACTAA AGCAGGCTCC GGCGTATGA
|
|---|
| Protein sequence | MPPKLLAIGG WLRRRAENLL CLMLLTMFIV FTLQIIFRYA LNLSIGWTHE VSVALWIWIV
LFGSAFVVRE VDEIRFDLIW SGASDRSRRV MQIICAAALI FLFGISLPAV IDYVTFMKVE
STAYLKIRFD YLYSIYVIFA ISMILRYIWL AIQAIRGRAP DAFDPTKAGS GV
|
|---|
| |