Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5608 |
Symbol | |
ID | 5319910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 576858 |
End bp | 578051 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640777352 |
Product | major facilitator transporter |
Protein accession | YP_001314284 |
Protein GI | 150377689 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.338314 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTGCGAA ATCACCCTGC CACGTTCCTC CTCGCGGCTC GTGCAGTCCG CGACATAGGC GACGGCTTCG TATCCGTGCT GTTACCGATC TATCTGCTCG CGCTCGGATT TACTCCGCTT GAGGTAGGCG TCATCGCAAC GGCATCGCTC CTTGGCTCGG CGCTGCTGAC GATATGTGTC GGGTTCCTCG GAGCCCGGTA CGATCATCGC CAAATCTTGC TGGCCGGTGC GAGCCTCATG ATTGCGACCG GCGTGACCTT TGCCGTTGTC CACGAATACG CGCTGCTTCT GGTCATCGCG TTCGTCGGGA CGATCAATCC CTCGGCCGGC AGCGTCAGCG TATTCGTGCC GTTGGAGCAC GCCGTGCTCA CACGCGAAAT CCCGGCGCGA GAGCGAACCG GGATGTTCGC GCGTTACAGC CTTGTGGGGG CGTTCGCGGC TGCCGTTGGT GGACTGGCTG CGGCTGTACC TGACCTTCTG GGGCCAATTG GCCTCGACCG GCTCGGGGGC ATCAGGGCCA TGTTCGTCGT TTACGCGCTT CTGGGACTGC TCGGCGGTTT GCTCTACGCG CAAGTCCCGC GCCGCTCGGC ACCAGACGCG AACGCTATGG CCGCGCTCGG CCCTTCGCGC CATATTGTTT TCAAGCTGGC GGCGCTGTTC AGTCTCGATG CCTTCGCCGG TGGCTTCGTC GTCCAATCGC TGCTCGCGCT TTGGCTGTTC GAGCGATTTG GCCTGTCGCT TTCAGAGGCG GGTGTTTTCT TCTTCTGGTC GGGCGTGCTG TCGGCGCTGT CGTTTCCTGT GGCCGCATGG CTGTCGCGAC GCATCGGACT GATCAACACG ATGGTGTTCA CACACATCCC GTCCAGCATC GCTTTAATGC TGGCGGCGCT TGCGCCCACA CTATCCCTCG CGCTTGCCTT TCTGCTGGTC CGGGCCGCAC TGTCGCAGAT GGACGTGCCG ACGCGCTCGT CCTACGTGAT GGCCGTCGTC ACCGAGGCGG AGCGAGCCGC CGCTGCAAGC TTCACCTCGG TTCCGCGCAG CCTTGCCGCC TCGGTCGGTC CTGCACTGGC GGGCGCTCTC TTCGCCGCCT CTTTCCGGGC ATCGCCGCTG CTTATCTGCG GCGCGTTGAA GATCGTCTAC GACCTGCTGC TGCTGATGCA GTTCCGGCGG TTGAAGCCGC CGGAGGAATG CTGA
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Protein sequence | MLRNHPATFL LAARAVRDIG DGFVSVLLPI YLLALGFTPL EVGVIATASL LGSALLTICV GFLGARYDHR QILLAGASLM IATGVTFAVV HEYALLLVIA FVGTINPSAG SVSVFVPLEH AVLTREIPAR ERTGMFARYS LVGAFAAAVG GLAAAVPDLL GPIGLDRLGG IRAMFVVYAL LGLLGGLLYA QVPRRSAPDA NAMAALGPSR HIVFKLAALF SLDAFAGGFV VQSLLALWLF ERFGLSLSEA GVFFFWSGVL SALSFPVAAW LSRRIGLINT MVFTHIPSSI ALMLAALAPT LSLALAFLLV RAALSQMDVP TRSSYVMAVV TEAERAAAAS FTSVPRSLAA SVGPALAGAL FAASFRASPL LICGALKIVY DLLLLMQFRR LKPPEEC
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