| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5574 |
|---|
| Symbol | |
|---|
| ID | 5319876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 539716 |
|---|
| End bp | 540591 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640777322 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001314254 |
|---|
| Protein GI | 150377659 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0951209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0662694 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCA ATCAGGTCAG GTACTTTCTC AATCTGGCCG AAACATTGAA TTTCACCGAA
GCCGCGCGTC GAAGCGGGGT TTCCCAGCCC AGTCTCACGC GGGCAATCCA GCGCCTCGAG
GAAGACTTGG GCAGTCCGCT GATCTATCGC GACGGCAAGG ACAGCCGCCT GACCTCGCTC
GGCCGCGACG TTCAGGCCGA GTTCATGCGC ATTGAGCTCG CGCTTAGAAA CGTGCGCGAG
CATTCCGAAA ACACGGTGCT CGGCCGGCGC CGTATTCTCG ATATCGCTGT CGCTCCCACC
ATCGGCCCTG CCGCATTTGC CGCATTCTTT GACGACGCGC TTGACGAGCT TCCTTCGGTG
AAAATCAACA TGCATCAGCT TTTGGCCGGC GAAGGCGCGA ACGAAGTGCT TTCGGGCAAG
TATCACGCCT GTATCCTGCC GCGGGCGCCG CGTCCCAACC CCAAGCTCAA CGTCGTGCCG
CTCTTTCGCG AGCCGTTCCT CCTCGCCTGC GCGGAGAGCC ATCCGCTGGC GCGCAAGGAT
GTCGTCAGCA CCGAGGCGAT CGCCGCCTAT CCCTATGTCG ACCGGCTAGC CTGCGAGTTT
CACACCGAGA TCACCGAGCA CCTGATGGAC CATGACGCGG TCATGCAGCC GCGCTTCAGT
GCCGACCGCG AGGACTGGGT GCAGCAGGTC GTCGCCGAGG GCCGTGCGAT CTGCATCATG
CCCGAGCGGT CCATCGTCGT GCAGGGCATC GTTACCCGCC CGGTCAAAGG GATTTCCCTG
GCGCGCGAAC TGGTATTCGT GACGGTCTCC GGCTCCGGCA CGCCGCTCGA GATCCGCAAG
ATCGCGCAGC TGGCGGCTCG GCGCGACTGG TCGTGA
|
|---|
| Protein sequence | MDINQVRYFL NLAETLNFTE AARRSGVSQP SLTRAIQRLE EDLGSPLIYR DGKDSRLTSL
GRDVQAEFMR IELALRNVRE HSENTVLGRR RILDIAVAPT IGPAAFAAFF DDALDELPSV
KINMHQLLAG EGANEVLSGK YHACILPRAP RPNPKLNVVP LFREPFLLAC AESHPLARKD
VVSTEAIAAY PYVDRLACEF HTEITEHLMD HDAVMQPRFS ADREDWVQQV VAEGRAICIM
PERSIVVQGI VTRPVKGISL ARELVFVTVS GSGTPLEIRK IAQLAARRDW S
|
|---|
| |