| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5550 |
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| Symbol | |
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| ID | 5319852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 514088 |
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| End bp | 516499 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640777299 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001314231 |
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| Protein GI | 150377636 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0835247 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAATGT CACTTGACGA GGACGCAAGC ACGTATGGGT CCAACGACGG CCAAGGAATC
TTGAACAGCC TTCCCGGCCT GGTCTGGACA ACGGACGAAA CAGGCGCCCT GTGCTACGCG
AACTCGCGCT TCACAGAGTT CACTGGACTG ATGATCGATC AGGGTGGTTC GCGGCAGTGG
GCAAGCTATC TCCATCCGGA CGATCATCTC CTCGTCGTTC CGGCGCAGAA GGGTGGAGCT
CAACTCTTCG CTGCCCGTTT GCGGCGACGG GACGGACAAT TCGAATGGTT CAATCTTTCT
GCTTCGCCAA TGAAAGGGTT CGGAGGGGAG GTCTGTTGGC TTGCGACAGA GCGTCTTGAG
AGGATCGACA ACCAGTTTGG CAACGCCGAT CGTGACTTTC GGAGTTTCCT AGATTCCCTG
TCACTCCAGG CGCTTCTACT AACGCCTTCC CTGGAACTTG AGTTTGGAAA TCAGGCAGCA
TTGCGGTGGT ACGGCTTGTC ACCAGGCGCC CAGGTGCAAG ACAGATCAGT CCACTTCAAT
CTTAGCAAAC TGAAAGAAAT CGCTTTTCAT TCGCAGGCCG GGCAGGGCCG AAATGACTCA
GCTGTCGTGT CGTATCAAGC GCTCTCTGCG GACGGAACGC TGCGCTGGCT GGAGGCACAG
GTCGTACAAA TTCGAATGCA GAACGGAGAG TTGGCGGGCT ATTGCGTCCT TCAGACCGAC
GTTCAGGACA GCCGGGATTC CTCCCACCTG CTCGGGCAGG AAATGGAGAT ACTCGAAATG
GTTGCGCGAG GCGCACCGTC GGCAAGTGTT CTTCAACGGC TCTGCGACGT TGTCGCGGAT
CTGGTTCCGG ACCTCGTTTG CGGGTTCCTC GAGCTTTCGC TTGACCGCAA GCTCTTCCGC
ATGGGCGCGG CTACCAGGCT GGCAGGAGAG TTCAGGGAGA TCTTCGACGG CAGGAGCGTG
ATTTCGGACA AGAACCCCTG CTCCACAGCC GCTCTGACAA AAAGGACTGT CGAGATCGCG
AATATGGTCG AAAGCGACCA GCGCGAGACC TCGATGGGCG AGATCATGTT GGCCAACGGT
CTGAATTACT GCAAGGCCAT TCCCATTCTG TCCCCGTATG GGAACACGGC CGGGATACTT
GCAATCCTAA GACATCAGCA AGCAGACCTC GGACCTCGCG AGCAGCAAAT AGTCGATCGA
GCCAAGCACA TCGCAGCTAT CTCGATAGAC AGGACTCGTC ACGAGGAAGC TCTAGTCAGG
CGAGAGACGC AGGTCGAACA GAGCCAGGCG CAGCTCGTCG CCGCTCAACG GATTAGTTCA
ACAGGCAGCT TTACATCTGA TATCCAGCGG GATGAGAACA TCTGGTCCGA AGAGTTCTAT
CGAATTTTTG ACCTCGACCC GAAGCTAGAG CCCAGCATCG ATGCGGTCAG GGAACGGGTT
CATCCAGAAG ACCTGGATCT CTTTGACTTC GAGATGAAGA GAGGGTTTGC TGGCGAGGAT
GCCGATTTCG TCTTCCGGAT CATCAGGACA GACGGGACCC TCAGGTTCAT TCGAGGACTT
GCGAGGGTTA CACATTACAT CGGCGATCAC CCAGTGTTCA TGGGAACGGT ACAGGACATC
ACCGAGACAA GACGAGCGGA AGATGCTCTC CGACGCGGCG AGGAAGCACT TGCGAAAGCC
CGAGAAGAAC TCGCGTATGT GTCCCGCGTG ATGACAATAA GTGCTCTGAC GACGTCCATA
GCGCACGAGG TGAGCCAACC ACTTTCGGGC ATTCTCGCGA ACGCCAATGC ATGTGTCCGT
CTTTTGGCGC TCGATCCGCC GAACATCGCC TCCGCAACAG ACACTGCCCG GCGGACGATC
CGAGACACGA TGCGTGCGAC CGAAGTTATC AAGCGACTTC GGGCTATGTT CAGTCGACAG
TCTCCACCCA TGGAGAAGAT CGACCTCAAT GAGATAGCTC GCGAGGTCAT TGCATTGTCG
GCGCGAGACA TGCGTGAGAA ATTTATCGTC CTGGAGGCCA GGCTGGCGCC AGAGTTGCCG
CCTGTCACAG GCGATCGCAT TCAGCTTCAG CAGGTCATTC TCAATATGGT CTTGAACGGG
ATCGAAGCCA TGGCGGAGAC CGAGGAGCGG CCTCGCCGTC TGCTCGTGCG CACTGCACTG
GTGAGCGAGG ATATCCTCAC GTTGTCCATC TCGGATGCGG GCGTCGGAAT CGCTGCTGAC
GCTGCGGACA AGATGTTCGA ACCGTTCTTC ACGACCAAGC GCGACGGGAT GGGCATAGGC
CTCTCCATCA GCCGCTCGAT AGTTGAAAAT CATGGCGGCC GAATGTGGGC GATGTCGAAT
GACGGACCAG GCGCAACCTT TGCCTTCTCT CTTCCGAGCC TTGGCAAGCC GACGGACCGA
TCGGCAACGT GA
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| Protein sequence | MSMSLDEDAS TYGSNDGQGI LNSLPGLVWT TDETGALCYA NSRFTEFTGL MIDQGGSRQW
ASYLHPDDHL LVVPAQKGGA QLFAARLRRR DGQFEWFNLS ASPMKGFGGE VCWLATERLE
RIDNQFGNAD RDFRSFLDSL SLQALLLTPS LELEFGNQAA LRWYGLSPGA QVQDRSVHFN
LSKLKEIAFH SQAGQGRNDS AVVSYQALSA DGTLRWLEAQ VVQIRMQNGE LAGYCVLQTD
VQDSRDSSHL LGQEMEILEM VARGAPSASV LQRLCDVVAD LVPDLVCGFL ELSLDRKLFR
MGAATRLAGE FREIFDGRSV ISDKNPCSTA ALTKRTVEIA NMVESDQRET SMGEIMLANG
LNYCKAIPIL SPYGNTAGIL AILRHQQADL GPREQQIVDR AKHIAAISID RTRHEEALVR
RETQVEQSQA QLVAAQRISS TGSFTSDIQR DENIWSEEFY RIFDLDPKLE PSIDAVRERV
HPEDLDLFDF EMKRGFAGED ADFVFRIIRT DGTLRFIRGL ARVTHYIGDH PVFMGTVQDI
TETRRAEDAL RRGEEALAKA REELAYVSRV MTISALTTSI AHEVSQPLSG ILANANACVR
LLALDPPNIA SATDTARRTI RDTMRATEVI KRLRAMFSRQ SPPMEKIDLN EIAREVIALS
ARDMREKFIV LEARLAPELP PVTGDRIQLQ QVILNMVLNG IEAMAETEER PRRLLVRTAL
VSEDILTLSI SDAGVGIAAD AADKMFEPFF TTKRDGMGIG LSISRSIVEN HGGRMWAMSN
DGPGATFAFS LPSLGKPTDR SAT
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