| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5522 |
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| Symbol | |
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| ID | 5319824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 486135 |
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| End bp | 488762 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640777275 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001314207 |
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| Protein GI | 150377612 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.982375 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCGG GGCTCGTTCG AGTTCTCGAC ACTTTGCCGG GTATGGTGTT CAGCATCAAC
CCCGGTGGCG TCATCGACTT TGTCAATCGG GCCCTCGCGG ATTACGTTGG CATTCAATTT
CAAAGCGACA GGGACTGGAG TTGGCCGATC GCCATCGAGC GTCCCGATGG CGCGACATTC
CACTCGAAAC TCCGATCGAT GTTGCAACAG AGCCAGCCGT TCCAGATGGA AATTCCCCTC
AGCCTCCCAG ATGGGGTTGG CCGTTCGCTT CTTCTGCGCT GCAACCCGAT GGATGATGGC
GCGGCCGAAC GTCGATGGTA CGGCATCGCT ACTGAGTCTA CCGTGGATAG CCGTCCCCGT
GACAAAAACG ACTTTCAACG TATCGTGGAC AGCATTCCGG TGCCGGTGGC AGTAACAACA
CCGAGTGGCG ATGTCGAGGC TCTCAACAAT CCGGCTCTCG AATACTTTGG CAGGACACTG
GAGGAGCTGA AGGACTGGAA AGCGACGGAG GTTGTTCATC CGGAGGACCT CCAAGCGACC
ATTGAGGACC AACTAAACGC GCATCTCGCT GGGACGTTTT ACAACGTCGA AAGCCGACAT
CTGCGTCACG ATGGAATGTA TCGCTGGCAC AATGTTCTCG GTCTCCCCCT TAGAGATGTG
AACGGCACGA TTTTGAGATG GTTTCATCTC CTGGTCGACG TCGACGATCG CAAGCGCGCG
GAACTGGAGC TAGCAGCGCG CGAGCGCGAA GCACGAGTGG TCCTCGAAAG CATTCCCGCT
GGCATCGGCG TTATCGGCAT CGGTGGAGAG GTAGAGGCGA TAAACGGTCC GCTTCTGCGC
TACTACGGAC GAACGCTCGA AGAGCTTCGG GATTGGGGTA GCACGGACGT CGTTCATCCC
GATGATATGC CCAGGATGAT CGATGCAGTC GATCGTGCCG TAGCACTCGG ACAACCGTAC
GATCTTGAGG TTCGGCTCCG AAGAGCAGAC GGGGTCCATC ACTGGTTCCA GGTCACGGGT
TCGCCGCTCA TCGACGACGA GGGAAAAATC GTCCGCTGGT ACGCCTTGCA CGTTGACATC
GACGACCGCA AGCGCGCCGA GGAGGCACTT GCGGAGCGCG AGCGGGAATC AAGGTTCATC
GTTGATGGCA TTGCCGGGAT GATTGCCATT TTTTCGCCTG ATGCGAAGCT AGTCGGCGGC
AACCAACAGA TAATCGACTA CTTCCAGCGT CCAATTGATG AACTCGACAA CTGGGCAACC
AACGGGATCA CTCATCCAGA CGACCTACAG CTATGCATCG ACAGCTTCAT GGGTTCGATC
GCGACTGGCG AGCCATACGA TTATGAAACC CGATTCCTGC GCCATGACGG GATTTGGAGA
TGGTTCCAAC TCAGAGGTCT TCCGCTCCGC AATACCGACG GCGAGATTAT CCGCTGGTAT
GGATTGTTGA CCGATATCGA TGATCGCAAG CGAACGGAGG AACAACTTAG GCGAAGCGAA
GCATTCCTGG CTGATGCACA GCGGTTAAGC AAGACTGGCG GCTTTTCGCT GCGACTGGAA
ACTGGCGAGA TTGTCTGGTC CGCCGAGACC TATAGAATAT TCGACGTCGA TCCGAGCAGT
CCCGTGACCA TCCAGACTGT ACTCTCGCGA CTGGATCCTG AGAGCGTGCT CAAAGTTTGC
AACGTGATCG AAACTGCTCG CGCAGGAAAT GGCGACTTTG ACTACGATAT TCGGCTTGTT
ATGGCGGATC AGTCCGTCAA GCATGTTCGC GTGCTTGCAC ACAGTAAAAA AAACAAGGAT
GGCGAGCAAG AGCTAGCCGG AGCGGTTCAG GATGTCACGG AGCGCCGCGA GGCGGAGGAA
GCACTAAACA AAGTCCGTTC TGAACTCTCA TATGTGACAC GTATAACCAG CCTTGGGCTA
CTGACCGCAT CCATTGCCCA CGAAGTCAAC CAGCCTCTGG CTGGAATTGT GACTAACGCA
AGCACATGTC TTCGTGTTCT CGACACCGAG CCGCCCAACC TCGAAGTGGC TAGGGATACA
GCTCGCCGCA TGATCCGCGA CGCCAACCGT GCAGCCGATG TCATCGTACG GCTGCGGGCA
CTCTTCAGTC GTAAGCCGCC GTTGATCGAA CCCATAGACA TGAACGAGGT CGCCACAGAG
GTGATTGCCC TCGCGTTCGG TGAGATCCAG CGAGCTCGCG TTTCGGTCGT ATCAGAATTC
GGCGCAGCAC TCCCCTCCGT CGCAGGTGCG CGCGTACAGC TCCAACAGGT GATCATGAAC
CTGCTTCGCA ACGCTATCGA GGCAACATCA GCCGTCGAAG GGCGCCCGGG CCGTATCGTC
ATCAGAACAG AGGCCAGAGA CGCAGAGGTC CGATTGATCA TCGAAGATAC CGGGATCGGC
TTCGGGATGG ATGGTACAAA GCGGATCTTT GACGCCTTCT ACACAACCAA GCCCGATGGA
ATGGGCATCG GGCTGTCCGT TAGCCGCTCG ATTATTGAAA GTCACAGTGG TCGCCTTTGG
GCGCAGAGCA ATGCCTTGCA TGGAGCAACA GTCGGTTTCT CCGTGCCAAT CCACCCGCCC
GGGCAAGCTG AAACCTTTCA GACGGATGGC TCGGTGGCAC CAAGATAA
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| Protein sequence | MEAGLVRVLD TLPGMVFSIN PGGVIDFVNR ALADYVGIQF QSDRDWSWPI AIERPDGATF
HSKLRSMLQQ SQPFQMEIPL SLPDGVGRSL LLRCNPMDDG AAERRWYGIA TESTVDSRPR
DKNDFQRIVD SIPVPVAVTT PSGDVEALNN PALEYFGRTL EELKDWKATE VVHPEDLQAT
IEDQLNAHLA GTFYNVESRH LRHDGMYRWH NVLGLPLRDV NGTILRWFHL LVDVDDRKRA
ELELAARERE ARVVLESIPA GIGVIGIGGE VEAINGPLLR YYGRTLEELR DWGSTDVVHP
DDMPRMIDAV DRAVALGQPY DLEVRLRRAD GVHHWFQVTG SPLIDDEGKI VRWYALHVDI
DDRKRAEEAL AERERESRFI VDGIAGMIAI FSPDAKLVGG NQQIIDYFQR PIDELDNWAT
NGITHPDDLQ LCIDSFMGSI ATGEPYDYET RFLRHDGIWR WFQLRGLPLR NTDGEIIRWY
GLLTDIDDRK RTEEQLRRSE AFLADAQRLS KTGGFSLRLE TGEIVWSAET YRIFDVDPSS
PVTIQTVLSR LDPESVLKVC NVIETARAGN GDFDYDIRLV MADQSVKHVR VLAHSKKNKD
GEQELAGAVQ DVTERREAEE ALNKVRSELS YVTRITSLGL LTASIAHEVN QPLAGIVTNA
STCLRVLDTE PPNLEVARDT ARRMIRDANR AADVIVRLRA LFSRKPPLIE PIDMNEVATE
VIALAFGEIQ RARVSVVSEF GAALPSVAGA RVQLQQVIMN LLRNAIEATS AVEGRPGRIV
IRTEARDAEV RLIIEDTGIG FGMDGTKRIF DAFYTTKPDG MGIGLSVSRS IIESHSGRLW
AQSNALHGAT VGFSVPIHPP GQAETFQTDG SVAPR
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