Gene Smed_5453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5453 
Symbol 
ID5319755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand+ 
Start bp419996 
End bp420613 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content59% 
IMG OID640777215 
Producthypothetical protein 
Protein accessionYP_001314147 
Protein GI150377552 
COG category[K] Transcription 
COG ID[COG5340] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.468294 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGGCT CCGTCACTCA ACGTCAAATC GCCCGGACCG TGCTCATCGA GCGCGGAATA 
GCACGCCTGG CGGAGCTTCG GAACGCTGGT GTGACGGCGG CAACCATGAG CCGGATGGAA 
CGGGATGGCG AGGTGCTGCG ACTTGCCCGT GGCCTCTACC AACTTCCCGA CGCCGAGCTC 
GATACCAACC ATAGTCTGGC AGAGACCGCC AAGCGTGTTC CGAAAGCCGT TGTCTGTCTT 
GTTTCAGCTC TCGCATTCCA CGGCCTGACC GATCAGCTGC CGAGACACGT GTGGCTTGCC 
ATAGGCCGCA AAGACTGGGC GCCGAAACTA GATGGCACAC CTATTCGTAT CGTGCGCTTT 
ACGGACAGCC TGCTTAACGA TGGTGTCGAA ATCCATGTGG TCGAAGGCGT TCCTGTAAAG 
GTCTTTGGAG TCGCCAAAAC AATTGCCGAT TGCTTCCGCC ATCGCAGCAA GATCGGTCTT 
TCTGTGGCGA TCGAGGGACT TCAGGAAGCA CTGCGGCAGC GCAAGGCTAC GCCCAGCGAC 
ATCGTCAACC AGGCCGAACG TGGTGGTGTC GGCACCGTGA TCCGCCCCTA TCTCGAGGCA 
TTGACCGTCA ATGGCTAA
 
Protein sequence
MSGSVTQRQI ARTVLIERGI ARLAELRNAG VTAATMSRME RDGEVLRLAR GLYQLPDAEL 
DTNHSLAETA KRVPKAVVCL VSALAFHGLT DQLPRHVWLA IGRKDWAPKL DGTPIRIVRF 
TDSLLNDGVE IHVVEGVPVK VFGVAKTIAD CFRHRSKIGL SVAIEGLQEA LRQRKATPSD 
IVNQAERGGV GTVIRPYLEA LTVNG