| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5386 |
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| Symbol | |
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| ID | 5319688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 350761 |
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| End bp | 352053 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640777156 |
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| Product | conjugal transfer protein TrbI |
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| Protein accession | YP_001314088 |
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| Protein GI | 150377493 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0420791 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCAGT CGCTTCAGCT CGGCGCGTCC AGTCATGCCG ACGATCAGAA GGCCATGCGC
CGCCTCAACC GCCTGCCGAT CTTCGTTGCC ATCACTGTCA TCGTGCTTTT TTTCGCCGTC
GTTGTGATTG GCCTGTCGTG GCGCGGGGTC TCCCTCAAGC GTGGCGACGA CACCCAAAGC
ATCTCCAATA CTCCGGCGAC TAGCTTCGGC GAGCAACTCA AACGGGGTGT AACGGACGGT
ATCATCGGAG AGCCAGTTGA ACGCGAGGCT TTCCAGCCGA CGCCAGTCGT TCACAAGGTC
GACACGCAAG AATCCGTTGT TGAAAGAAGG CCTGGGGAAC GAAAGGAGCG ACGACCTAAG
CTTGAATCCG AAGAGGAGTG GAAGGCTCGC CTGAAGCGAG AGCAGGATGA GCAGTATATA
CGCGAGGCCC ATCGCCAACG AATGGCTCGC CTCCAAGCCC ATGCGACCGC GCTCGATTCT
CCGCTGAAGG TGGACGTTTC CGATATCAAG AATTCAACAA ATCACGCCAA CACTCGTCAG
TCTAGAAATC TCGAAGCGAA GGGTGCCTCA GACCTACATG CAGCTGCTAT GAAATCGGGC
CTGATAAGCC AGCAAGTCGA CCCGAACGGC CAGATATCCA AGGAGGAGTT TTTTAATAAG
GAAATCAAGG ATCTTGGCTA CCTGCCGAAC CAGGTTGTAC CGCAGTTGTC ACCTTACGAA
TTGAAACGCG GCTCGGTTAT TCCGGCCACA TTGATCACTG GCCTCAATTC CGATTTGCCA
GGACGCATTG CTGCTCAGGT CAGCCAGAAC GTCTATGACA GCGCTACCGG CTACAGACTG
CTCATTCCGC AGGGAGCCAA ACTCCTGGGG CGCTATGATT CGAAGTTATC CTTCGGCCAA
GAGCGGGTTC TGGTCGTCTG GACCGATTTG ATCTTTCCCA ACGGTTCAAC GCTGCAGATT
GGCGGCATGG CCGGCACAGA CGCCGAAGGA TATGGCGGCT TCAAGGATAA GGTCGACCGT
CATCTGTGGC GGACCTTCGG TTCCGCGGCT CTAGTCGCAA TAATCGGAAC CGGTATCGAT
ATGTCGTTGC CAGAGAGTTC AACGCTTGCA ACGCAGGACA CCGCCTCAGA CGCTGCAAGG
CGTAATTTCG CGGAAAGCTT TGGTCGGGTG GCGGAACAGA CGATCTCAAA GAACCTCAAT
GTGCAGCCGA CGATCCGTAT CCGTCCTGGC TACAAGTTCA ATATTCTCGT TGATCAAGAT
ATTGTTTTTC CGTCGGTTTA TAATGGCCAT TGA
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| Protein sequence | MVQSLQLGAS SHADDQKAMR RLNRLPIFVA ITVIVLFFAV VVIGLSWRGV SLKRGDDTQS
ISNTPATSFG EQLKRGVTDG IIGEPVEREA FQPTPVVHKV DTQESVVERR PGERKERRPK
LESEEEWKAR LKREQDEQYI REAHRQRMAR LQAHATALDS PLKVDVSDIK NSTNHANTRQ
SRNLEAKGAS DLHAAAMKSG LISQQVDPNG QISKEEFFNK EIKDLGYLPN QVVPQLSPYE
LKRGSVIPAT LITGLNSDLP GRIAAQVSQN VYDSATGYRL LIPQGAKLLG RYDSKLSFGQ
ERVLVVWTDL IFPNGSTLQI GGMAGTDAEG YGGFKDKVDR HLWRTFGSAA LVAIIGTGID
MSLPESSTLA TQDTASDAAR RNFAESFGRV AEQTISKNLN VQPTIRIRPG YKFNILVDQD
IVFPSVYNGH
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