| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5312 |
|---|
| Symbol | |
|---|
| ID | 5319614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 268376 |
|---|
| End bp | 269491 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640777087 |
|---|
| Product | Serine--pyruvate transaminase |
|---|
| Protein accession | YP_001314019 |
|---|
| Protein GI | 150377424 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.295521 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTATC CCTTTTCGCC GCCGCCCCGT CTGCTGATGG GTCCCGGTCC GTCCAATGTC
TCGCCGGAAG TCCTCGCGGC CCAGGCACGC CCGACGATCG GCCATCTCGA TCCCGGGTTC
GTCAGGCTGA TGGACCTCAT CAAGGGCCAA CTGCGCGCCG CTTTTCGAAC GAACAACCGC
GTAACCTTTC CCCTTTCCGC CCCCGCTTCT CTTGCCATGG AGATGGCACT GGTGACGCTG
CTCGAGCCCG GGGACACCGC GATCATCGCC CAAAACGGCG TGTTCGGCGG ACGCATGGCC
GAGATCGCCC GACGAGCCGG CGCGACGGTG CAGCTGGTTT GCGCCGAATG GGGCAAGCCT
GTCGATCCCG AAGCCGTCCG TGCATCGATG CTGGAGGCGC CGCAGGCCAA ACTCCTCGCT
TTCGTGCACG CGGAGACCTC GACCGGGGTG CGATCGGATG CGGCCGCGCT CTGCGCTCTG
GCGCGCGAGG CGGGGATGCT GTCGGTCGTG GATACAGTGA CCGGTCTCGG CGGAATTCCG
GTACTGGTCG ACGATTGGCA TGCCGATGCT GTCTATGCCG CCACGCAGAA ATGTCTGTCG
GCACCGCCCG GTCTCGCGCC TATTACCTTT TCCGATCGCG CAGTCGCAGC GGTGATGGCG
CGCACGTCGC CAATCCAGAG CTGGTTCCTC GATCTTGGGC TGATGCTCGG CTACTGGGAG
GGTGAGGGTG CTCGATCTTA TCACCATACG GCTCCGGTAA ATGCCCTTTA TGGCCTGCAC
GAAAGCCTCT CGCGCCTGCT CGAGGAAGGG CTGGAAACGT CTTGGGCGCG CCACCGCGCC
GCTCATGAGC AGTTGGCCGA TCGCTTGCAG GGGCTCGGCG TCGCTTTCGT CGTCGACAAA
GCCCACCGGC TGCCGCAGCT GAACACGGTG TGGGTCCCGG AGGGTGTGGA AGATGCGCCC
GCTCGCAGAC GCCTGCTTGA CGAATTCGGG ATCGAGATCG GTGGAGGACT TGGGCCGCTC
GCGGGCCGCA TCTGGCGCAT CGGGCTGATG GGTGAGACGT GCCGGATGGA GAATGTGGAG
CGGCTGGCCG ACGCGATCGC GGCGATTTTG CCTTAG
|
|---|
| Protein sequence | MNYPFSPPPR LLMGPGPSNV SPEVLAAQAR PTIGHLDPGF VRLMDLIKGQ LRAAFRTNNR
VTFPLSAPAS LAMEMALVTL LEPGDTAIIA QNGVFGGRMA EIARRAGATV QLVCAEWGKP
VDPEAVRASM LEAPQAKLLA FVHAETSTGV RSDAAALCAL AREAGMLSVV DTVTGLGGIP
VLVDDWHADA VYAATQKCLS APPGLAPITF SDRAVAAVMA RTSPIQSWFL DLGLMLGYWE
GEGARSYHHT APVNALYGLH ESLSRLLEEG LETSWARHRA AHEQLADRLQ GLGVAFVVDK
AHRLPQLNTV WVPEGVEDAP ARRRLLDEFG IEIGGGLGPL AGRIWRIGLM GETCRMENVE
RLADAIAAIL P
|
|---|
| |