| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5292 |
|---|
| Symbol | |
|---|
| ID | 5319594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 255935 |
|---|
| End bp | 256855 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640777068 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001314000 |
|---|
| Protein GI | 150377405 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.469353 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.585021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGATG CCCTTACGCT CGATCAGATG CGCATCTTCG TCGCCATCGC GGAAGCTGGG
AGCTTCCGCG CGGCCGCTTC GCGCCTCTCC CGAGTTCAAT CTGCGGTCAG CCATGCGGTT
GCCAATCTGG AGGCGGAGCT CGGGGTGAGC CTCTTCGACC GCTCCGGGCA CCGGCCGGTC
CTAACGCCGG CGGGCCGGTC TTTACTAAGC GACGCGCGCG CCATCCTTCT CAAGACAGAC
ACAATGCGGG CGCGGGCTCG CGGGCTTGGG GAGGGAGTCG AACTCGGGCT TACGATTGCG
CTCGATCCGC AATTCCCGCC GGTTCTCGCC TGTGCTGCAC TGAAGGAGAT GCACCGGGCC
TATCCTTCCG TCGCCATTAG GGTACTCACG GCATCGCTCG GAGAAGCTGT TCATGCATTA
CGGGAGCGTC GCTGCGCATT GGCCATTAGT GGAATCGATC TTCCCGATCC GCATATAGAG
CGGCGGGCGC TCGCCCTTGT TCAACGCGCC GCAGTCGTCG CCGCCAGTCA CCCCCTCGGT
ATCCTTGCCG CAGCGGGAGG TCCGGTCACA GCGACGGATT TGGCGGATCA TGTGCAGGTC
GTTGCGGAGG ATCCATCTCC TCTTACGCAA GGTCGTGATT TCAACGTTCT GTCTCCTGGA
ACATGGCGGG TAGGTGACAA CGTGACCAAG CATGCGCTCA TCCTCGCCGG AATCGGCTGG
GGAAACCTGC CGCTCTGGCT GGTGGAGCGC GATCTGGCAG AAGGCCGGGT GGTACGGGTT
CCGGCCGCGG AATTCGGTCC GAAAGGCGAA ACAATGGCGA ACGCCTACCT GATGCACAGG
AGCGACGAGC ATCTCGGCCC CGCTGCACGT GCGTTTTGCG ACGCTTTGCT GCGCATGGCC
GGCCACCGAA CGGCACCGTG A
|
|---|
| Protein sequence | MLDALTLDQM RIFVAIAEAG SFRAAASRLS RVQSAVSHAV ANLEAELGVS LFDRSGHRPV
LTPAGRSLLS DARAILLKTD TMRARARGLG EGVELGLTIA LDPQFPPVLA CAALKEMHRA
YPSVAIRVLT ASLGEAVHAL RERRCALAIS GIDLPDPHIE RRALALVQRA AVVAASHPLG
ILAAAGGPVT ATDLADHVQV VAEDPSPLTQ GRDFNVLSPG TWRVGDNVTK HALILAGIGW
GNLPLWLVER DLAEGRVVRV PAAEFGPKGE TMANAYLMHR SDEHLGPAAR AFCDALLRMA
GHRTAP
|
|---|
| |