Gene Smed_5246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5246 
Symbol 
ID5319548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp208664 
End bp209536 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content59% 
IMG OID640777023 
Producthypothetical protein 
Protein accessionYP_001313955 
Protein GI150377360 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.428823 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.435436 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGTG CAATTCCCTC AATTTTCCTT CCCCGCCGTC GCGTTTTGCA GCTTGGCCTC 
GGCGCGACGT TCGCTTCAAC GGCAGGCTTC CCCTCGATCT CGCAGGCCGA CGAGCCGAGT
GACGTCGAAG ACGAGGACGT CTTCCAATTT GCGCTCAACC TCGAATACAT GGAGGCCGAG
TATTACCTGC GTGGCACGAC CGGAAAAGGA ATCGATGATT CTGACGCGGG TTCTGACGCC
GGTTCCGTGA GCGGCGGCAA GCAAGTTTCC TTCGATACCC CGGCGATCCG CGCGTTCATG
CGGGAGGTTG CGGAAAACGA ACTTGCGCAC GTCCGGTTCT ATCGCAAGAC GCTCGCAGAT
CAGGCTGTGC CGAGACCGGC CATTGATTTC GACGGCGGCT TTGCTGCGGT CGCGAAAGCG
GCGGGGCTCG GCGAGGACTT CGATCCATTC GGTAACGAGA CGAACTTCGT GCTCGGCGGT
ATGCTATTCG AAGACGTTGG CGTTACCGCC TATGCCGGAG CGGCGACCGT CCTCAAGAAC
AAGGACTTTC TCGCCGCGGC CGCGGGCATT CTGGCGGTTG AGGCTTATCA CATGGGAATG
GCCCGATCGA CCCTGTATCG AAAGGGCGAA GAAGCCTGGA AGGCCGCACA AGCGGTATCC
GACGCCCGGG ACAAGATCGA TGGCGCGGAA GACAAGGATC AAGGCATTCA GGAGGATGGC
AACGCCAACA TTGTTCCCTC GACGCCGGAC GCGATTGCGT TCAGCCGGAC TCCGCAAGAG
GTCCTACGCA TTGTGTATCT CTCGGACAAG GAAGGCACGA GTAAGGGTGG CTTTTACCCG
AATGGCATGA ACGGCAAGAT AAAAAGTACC TGA
 
Protein sequence
MIRAIPSIFL PRRRVLQLGL GATFASTAGF PSISQADEPS DVEDEDVFQF ALNLEYMEAE 
YYLRGTTGKG IDDSDAGSDA GSVSGGKQVS FDTPAIRAFM REVAENELAH VRFYRKTLAD
QAVPRPAIDF DGGFAAVAKA AGLGEDFDPF GNETNFVLGG MLFEDVGVTA YAGAATVLKN
KDFLAAAAGI LAVEAYHMGM ARSTLYRKGE EAWKAAQAVS DARDKIDGAE DKDQGIQEDG
NANIVPSTPD AIAFSRTPQE VLRIVYLSDK EGTSKGGFYP NGMNGKIKST