| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5189 |
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| Symbol | |
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| ID | 5319491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 144182 |
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| End bp | 145411 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640776967 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001313899 |
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| Protein GI | 150377304 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.484438 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.367271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGGAAT TCCTGATCTG CTCGCTGCTG ACCATTTTTC CGGACTACCT CGTCCGCCGC
TATGTCCAAG GCAAGCGCGT CGGCCGTGAG ATCAATCTCT ATTCCATGTG GTTTGAGCTT
CGATACGGCA TAACGGCCTG CCTTATCCTC ACCATTTCAC TGATCACAAT GATCTTCTAC
TTCCATCCAT CTACCAGCAA CGTCACCGCG GTGTTCCGCA CGGTAACGAT AATGCCCGAA
TCGACCGGGC GAGTAGCGGA GGTTTATGTC GACCTCAATG AGAAGGTTCC TGCCGGAGCT
CCCCTTTTCC GCCTCGACGA TTCCGAGCAA CGAGCAGCAC TCGAGACCGC CCGGCGACGC
GTCTCCGAGA TCGAGGCAGA GGCAATTGTT GCGCGAAGCG AACTGGCCTC CGCCGACGGC
CTTATCGCCC AGGCCGAGGG CGACTATCTT CAGGCGCTGA ATGAACTCGA GACGCAGGTC
GAATTGAACG AGCGCAACCC CAACATCGTC GCAAGGCGCG AAATCGAGCG CCTGCAGGTC
GCTGTCGACG GTCGCGATGG TGCGCGTGCC GCGTCGATCT CCAACAAGCG GACCTTGGAA
ACGAAAATCG CCTCACTCCT GCCGGCGCAG AAGGCGAGCG CTGAAGCGGC GCTGAACCAA
GCCCAGGTGG AGCTTGACAA GACGATCGTA CGGGCTGGAA CCGCCGGCGT AGTGCAGCAG
TTCGCGCTCC GAGCTGGAGA TATCGTCAAT CCGATGATTC GCTCGGCCGG TATCCTGGTT
CCCGAGCAAC GCCGCGTTGG CCTGATCGCT GGCTTCGGCC AGATCGAAGC ACAGGTGATG
AAGGCCGGGA TGATTGCCGA GGCGACCTGC ATCGGCAAGC CGTTCACCAT CATCCCGATG
GTAGTGACGG AAGTGCAAGA CGTCATCGCC GCCGGCCAAG TTCGTCCGAC CGACCAGCTC
GTCGACGCGC AGCAACTTGC CAGTTCTGGC ACGCTGACCG CCTATCTGGA GCCGCTCTAC
GAGGGGCAGT TCAGCGGGGT ACCACCTGGA AGCAGTTGCA TTGCCAACGC GTACACGAGC
AATCACGATG CACTACATGC GCCGGGCATC AGCACACCTC ACTGGCTATT TCTGCACGTC
GTCGATGCGG TGGGATTGGT GCACGCCATG ATCCTCAGGC TTCAGGCCCT GCTTTTGCCG
GTCCAGACGC TGGTCTTCAA GGGCCATTGA
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| Protein sequence | MLEFLICSLL TIFPDYLVRR YVQGKRVGRE INLYSMWFEL RYGITACLIL TISLITMIFY
FHPSTSNVTA VFRTVTIMPE STGRVAEVYV DLNEKVPAGA PLFRLDDSEQ RAALETARRR
VSEIEAEAIV ARSELASADG LIAQAEGDYL QALNELETQV ELNERNPNIV ARREIERLQV
AVDGRDGARA ASISNKRTLE TKIASLLPAQ KASAEAALNQ AQVELDKTIV RAGTAGVVQQ
FALRAGDIVN PMIRSAGILV PEQRRVGLIA GFGQIEAQVM KAGMIAEATC IGKPFTIIPM
VVTEVQDVIA AGQVRPTDQL VDAQQLASSG TLTAYLEPLY EGQFSGVPPG SSCIANAYTS
NHDALHAPGI STPHWLFLHV VDAVGLVHAM ILRLQALLLP VQTLVFKGH
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