| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5056 |
|---|
| Symbol | |
|---|
| ID | 5319358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 3499 |
|---|
| End bp | 4026 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776836 |
|---|
| Product | protein tyrosine phosphatase |
|---|
| Protein accession | YP_001313768 |
|---|
| Protein GI | 150377173 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0394] Protein-tyrosine-phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA CGACGTTCAA TGTCATGTTT CTCTGCACGG GCAATTCCGC ACGTTCGATC
ATCGCGGAAA GCGTTCTGCG AAGGGATGGA GCCGGCAAGT TCAATGCCTA TTCCGCGGGG
AGCCAACCTA AGGGCGAGGT CAATCCGTTC GCCATCGAGA CGCTCGCGGG CCACCACTAT
CCCGTCGAAG GGCTTCGGTC AAAGAGCTGG GACGAGTTTG CCGTGCCCGG CGCGCCCGAA
CTCGATTTCG TCTTCACCGT CTGCGACAAC GCGGCGGGCG AGGCCTGCCC GGTCTGGCCG
GGACAGCCCA TGACAGCGCA TTGGGGCGTC GATGACCCGG CAGCCGTCGA GGGGACAGAC
GCCGAGAAGC GCGTCGCCTT CGCCACGACG CTTCGCCATA TGAAACTTCG CATCGCTGCC
TTCGCAGCGC TTCCTGTGGA AAGCCTAGAG CGGCTGAGCC TGACGGCAAG ACTGCACGAA
ATAGGCCAGA TGGAAGGCTC CACTTCGCAA AGGTCCGACG TCGCATGA
|
|---|
| Protein sequence | MAKTTFNVMF LCTGNSARSI IAESVLRRDG AGKFNAYSAG SQPKGEVNPF AIETLAGHHY
PVEGLRSKSW DEFAVPGAPE LDFVFTVCDN AAGEACPVWP GQPMTAHWGV DDPAAVEGTD
AEKRVAFATT LRHMKLRIAA FAALPVESLE RLSLTARLHE IGQMEGSTSQ RSDVA
|
|---|
| |