| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5038 |
|---|
| Symbol | |
|---|
| ID | 5319087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1558248 |
|---|
| End bp | 1559225 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776819 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001313751 |
|---|
| Protein GI | 150377155 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.642958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.861569 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTGA TTTCTGTTGT CCTCGGCAGG CTGTCGCAAG CCTTCCTGCT CCTCATCGCC
ATGTCGCTGA TCGGCTTCAT TGGCGTCCAC AGCGTCGGCA ATCCGGTCTT CAATGTCGTC
AACATCGAAA CCGCCACGCC GGAGGATATC CGCCAGGCCA CGATCGCGCT CGGCCTCGAT
CAGCCGATCT GGCGCCAGTA CCTGCTTTTC ATCAACAATG TCGTGCGCGG AAACTTCGGC
ACCTCATATA TCTATCATCT GCCGGCCTTC GCGCTGGTCA TGAGCAAGCT GCCGGCGACC
CTGGAGCTCG CATGCGTCGC CATGCTTATC GCGGCGCCGG TTGGAACCGG CCTCGGGCTG
CTCGCCGGCC GGCGGAGCGG CACGATCTTC GACCGGACGG TCCTCAGATC GAGCGTCTTC
GCGCTGAGTA TCCCGTCATT CTGGCTGAGC ATGATGCTCA TCCTGCTCGG CGCCATCCTG
ACAGGCTGGT TTCCATCCGG CGGCCGCGGC ACGACGGCGC GGTTCCTTGG CCAGGAGTGG
AGTTTTCTGA CCGGGAACGG GCTCTGGCAC ATGGTCCTTC CTGCCCTGGC GCTGGCGATA
CCGAACGTCG CCTTGATCGC GCGGCTTTCG CGATCGGGCA CGATCGAAGT CGAGAACCTG
GACTTCACGC GGTTTTGTCG CGCGAAAGGG CTGTCCTCCC GAAGGATCCT GCTTCGCCAC
ACGCTTCCAA ACATCAGCGT GCCGATCGTG ACAATCATCG GCCTGCAATT TGGCGGCATG
CTCGCTTTTG CCGTGGTCGT GGAAACGATC TTCTCGTGGC CGGGCGTCGG CAAACTTCTG
ATCGACTCCA TCCAGCTCCT CGACCGGCCA GTGGTGATGG CGACGCTGAC CTTCATTGCC
GTCGCCTTCG TCGCGCTGAA TGCCCTCGTC GACTTGTTCT ATGCCGTGCT CGACCCGCGC
GTGCGCCTGT CTTCATGA
|
|---|
| Protein sequence | MPLISVVLGR LSQAFLLLIA MSLIGFIGVH SVGNPVFNVV NIETATPEDI RQATIALGLD
QPIWRQYLLF INNVVRGNFG TSYIYHLPAF ALVMSKLPAT LELACVAMLI AAPVGTGLGL
LAGRRSGTIF DRTVLRSSVF ALSIPSFWLS MMLILLGAIL TGWFPSGGRG TTARFLGQEW
SFLTGNGLWH MVLPALALAI PNVALIARLS RSGTIEVENL DFTRFCRAKG LSSRRILLRH
TLPNISVPIV TIIGLQFGGM LAFAVVVETI FSWPGVGKLL IDSIQLLDRP VVMATLTFIA
VAFVALNALV DLFYAVLDPR VRLSS
|
|---|
| |