| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4991 |
|---|
| Symbol | |
|---|
| ID | 5318712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1504933 |
|---|
| End bp | 1506063 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640776773 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001313705 |
|---|
| Protein GI | 150377109 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.723293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00320461 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTCG TCCTCAAGGG AATGACCTGG AACCACCCGC GCGGCTACGA CCCGATGGTG
GCCTGCTCGC GGGCCTGGCA GGAGACGTCG GGCGTCGAGA TCCAATGGGA GAAGCGGTCG
CTTCAGGACT TCGAGACGTT TCCGGTGGAA GTTCTTGCAA GGGATTACGA CCTGATCGTC
ATAGATCATC CGCATGTCGG CCAGATCACC AGCGAAAACT GCCTGCTTCC GCTGGACGTG
CCCGGGCGTG AGGCCGATCG GCAGGCTCTC TCGGCGGCAA GTGTCGGCCC CTCCTATCGC
AGCTACGAAT GGAACGCCCG CCAATGGGCC TTTCCGATCG ATGCCGCGAC CCAGGTGCAG
GCCTGGCGGC CGGATCGGAC CGAGCGCCTC CGGACCTGGC GGGAGGTGCT GGACCTGGCG
CGTTCAGGCG GCGTCGTTCT GCCGCTTCGC CCGCCCCATT CGCTGATGAG CTTCTTCACC
CTCTGCGGCA ATCTGGGGCG GCCCTGCCGC AGCAACGGGC AGGGCGAGCT CGTCGATGCC
GAAACGGGTG CCGCTGCAAT CGAGCTGCTG AAGGAGATCG CAGCCCTGGT CGACCCGGAC
TGCTTCGACA TGGATCCGAT CGCAGCCTTC GAGGCGATGG CGGAAAAGGG GTCCGCCTTT
GCCTGCGCGC CGCTCATCTA CGGCTATGTC AGCTACTCGA TGGCGGGCTT TCGGCCGGCG
CTCATCCGCT TCGGCGATAT TCCTGAAATC GGCGCGGCAG GACCGGTCGG CTCGGCTCTC
GGCGGGACGG GCATTGCGGT ATCCGCCTTT TCGAAGGCGC CGGAGCAGGC GATCGATTTT
GCCTATTGGG TGGCGAGCGG CGACGTGCAG CGGGGTATCT ACGCCGCCTG CGGCGGCCAG
CCCGGCCATG GCGCCGCCTG GCAGGACGAG ACGGTCAATG CGGCGACGCA TGATTTCTAC
CGCGCGACCC GGGCGACGCT CGAGGCTGCC TGGCTCCGGC CGCGCCATGA CGGCTATATG
GCATTCCAGC AGGCGGGTTC GGATCGCCTG AACGAAGGGC TCAAGCGCGG CGAGAGGCCA
AGCCTCGTGG CCGAAGAACT CAATCGGCTG TTCTGCGAGA GTTTTCGCTG A
|
|---|
| Protein sequence | MNLVLKGMTW NHPRGYDPMV ACSRAWQETS GVEIQWEKRS LQDFETFPVE VLARDYDLIV
IDHPHVGQIT SENCLLPLDV PGREADRQAL SAASVGPSYR SYEWNARQWA FPIDAATQVQ
AWRPDRTERL RTWREVLDLA RSGGVVLPLR PPHSLMSFFT LCGNLGRPCR SNGQGELVDA
ETGAAAIELL KEIAALVDPD CFDMDPIAAF EAMAEKGSAF ACAPLIYGYV SYSMAGFRPA
LIRFGDIPEI GAAGPVGSAL GGTGIAVSAF SKAPEQAIDF AYWVASGDVQ RGIYAACGGQ
PGHGAAWQDE TVNAATHDFY RATRATLEAA WLRPRHDGYM AFQQAGSDRL NEGLKRGERP
SLVAEELNRL FCESFR
|
|---|
| |