Gene Smed_4965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4965 
Symbol 
ID5318480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1479172 
End bp1479723 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content57% 
IMG OID640776747 
Productdehydratase 
Protein accessionYP_001313679 
Protein GI150377083 
COG category[I] Lipid transport and metabolism 
COG ID[COG2030] Acyl dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.696873 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0181187 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGAGT TTATGCCCAC CGTCGGAGTT TCGTCGACGC ATCCCGCCGA CATGCCGGAC 
GATCACGCCG CTCTGCCCGT GTGGAACGCG GAAAACTGGT TCTATGAAGA TTGGCCCATC
GGTCAGCGTA TCCGGTCGCT GCGTCGGACG ATCGGCGAGA GCGATAGCCA TCTCTTCAAT
ACACTTGTCA TCGATATCCA TCCTTATGTT CAGGATCGGA TGTTCGCGGA ACGGGAAGGA
ATATTTGGCC GTCGCCTCGT CGCCGGCGCC TTCGTGTTCT CGGCCGGTCT CGGCCTCGTC
GCGACCAACT GCGTGAACGC TTTTTCCTAC GGCTACGACA AGCTGCGCTT TATCAAGCCG
GTCTTCATCG GTGACACGAT TTACACGATC CGGACCAACA TGGAGAAGGT GCCCCGTTAC
AAAGACCTCG GCCTCATTCG CGCCAGCTAC CAAGTCTTCA AGAACGAAGG TGAACTGGTT
CTCTACTGCG AGCACCTGCA AACCGTGAAG TACCAGAACC CGGCCGATTT CGTTGGCAAG
ACCGAAAGGT AG
 
Protein sequence
MDEFMPTVGV SSTHPADMPD DHAALPVWNA ENWFYEDWPI GQRIRSLRRT IGESDSHLFN 
TLVIDIHPYV QDRMFAEREG IFGRRLVAGA FVFSAGLGLV ATNCVNAFSY GYDKLRFIKP
VFIGDTIYTI RTNMEKVPRY KDLGLIRASY QVFKNEGELV LYCEHLQTVK YQNPADFVGK
TER