| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4961 |
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| Symbol | |
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| ID | 5318476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 1473587 |
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| End bp | 1475953 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776743 |
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| Product | exopolysaccharide transport protein family |
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| Protein accession | YP_001313675 |
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| Protein GI | 150377079 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0489] ATPases involved in chromosome partitioning
[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | [TIGR01005] exopolysaccharide transport protein family
[TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.184697 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0547536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAA CGGCCCCCAT GAAACAAAGA AGCGTTCCCT TGAGCAGCAT CATGCCCAGC
GAAGAACAGT CCGACGGCTT TATCGACCTT GACCGGCTTG TAGCCGCCGT CTTCCGTCGC
GCCCGGCTCG TGACCGCATT CGTCGTTCTC TTCATCGCAC TGGGGGCCGC TTATCTCCTG
TTTGCCACGC CCTATTACAC GTCGATGACG CAGATCCTTC TCGACGAGAA CCTGTCCAAA
TACGCCGAAG AGGAGCCTGT CCCGGTAAAC AGCCAGATGC TGGATACGCA GATCGCAAGT
GCGGTCGAAA TCCTCAAGTC GGGCGAACTC GCGCTTCGCG TCGTCGACAA GCTCAAGCTT
TCGGAAAACG AAACCATCCT CAATCCGCCG CGCTCGCCCG TCGACGTCGT GAAGGAATGG
CTGAAGACGG CCACCGGACT CTTTGCGGGC GGACCTGAAG TAACCGAGGC GGCAGCGCGC
AACGGCCGGC GGCAGAAAGC TGCCGCGATC ATCCAGCAAT CGCTTGCGGT CGAGCGTGTT
TCGCGAAGCT CGGTCGTCGC CGTGGCTTTT CGCTCGAGCG ATCCGGTGCT TGCGGCGACC
ATCGCGCGTG GATATGCCAG CGCATATCTG ACAGACCAGC TGAACGCCAA TTTCGAAGCT
ACGGAACGCG CATCCGTCTG GCTGCAGGAA CGGCTTACGG ATCTTCAGCA ACGCTCGCAG
GCCGCCGCGC TGGAAGTCGC ACACTACAGG GCCGAGAACG GTTTGACGGC TGCGCGGGGC
GAGTTGATGT CCGAGCAGCA AATGGCCGAC CTCAACAGCC AGCTCATCGT TGCCCAGGCC
GACACGGCAA GTGCCTCCGC CCGCTACAAT CAGTACAAGT CGATCGTCGA CCAGGGGCCG
GAAAACGCAG TGAAGAACGC CACCATCTCC TCCAAGGAGG GTGACAATTC GGTAATCCGC
GACCTGAGGA CGCGCTATCT CACCGTCGGT AAGCGCGAGC GCGAAGTCTC CGACAATTTC
GGCGCCGACC ACCCGCAAGC GGTCTCGCTC CGCACCGAAC AGGAGGATGT GGCCCGTCAG
ATCTACCAGG AACTGCAGCA GCTCACTGCA AGCTATAAGA ACGAATACGA GGTCGCTCAG
TCGCGCGAGG CATCGCTCAG GAAAAGCATC CAGGGGATTG CCGGCAAAAC CTCCGACTCG
AGCGAGCAAC TCGTGCAATT GAGAGAGCTG GAACAGAAAG CCGCGGCCCT GAAGACGCTC
TACGAGTCTT ATCTCGGACG CTACGAACAG GCGACTCAGC AGCAAACCTT CCCGATCGCC
AAGGCTCGTG TCATTTCCGA AGCGGGCGTG CCCGTGTCAC CGTCGAGCCC AAAAAAAACC
ATGACGCTGG CGCTTTCGGC GGTGCTCGGC CTGATGGTCG GCGGTGCATA CGCGGCCTTC
CTCGAATTCC GCGAACGGAC CTTCCGCCTG GAGGGCGACG TACGCTCGAT CCTCGGCCAT
CGTTCGTTCG GCTACGTTCC GCTTCTCGGC ACGCGCATCA AGAAGAAGGC GCAACTCGTT
CACGCACATT TCGGTTCGGT GAAGAGAGCC GACGAAGCGG TGGACAATAC GATGCCGTTC
CAGCGATTGT CGCGCATCGT GGTCGATGCG CCGCGGTCGA CCTTCGCGGA GACCTTTCGC
AACGCCAAGC TTGCCTGCGA CCAGATGCTG GCGGGCAGTG AAAGCCGCGT GATCGCCATC
GCATCGGCCC TTCCGGATGA GGGGAAATCG ATCATTGCCG CAAACTTCGC CGCGCTTCTG
GCCGCGAGCG GCAAGCGGAC CCTGCTCATC GATGCCGACA TACGCAAGCC TGGCCTGACG
CAGATGATTA CGCCTGCCCC GCGCACCGGG CTGGTGGAAA CGCTGACCGG AGAAGCCACC
TGGCCCGCCG GGATCAAGGT GGACCAGCGT ACGAAACTGG CAATCCTTCC GGCCGGCGGT
GCATCGCACC AGCGCCACCA GAGTAACGAG CTGCTTGCCT CGCCGGGCAT GGCGAACCTG
ATCGAGAACG CGCGCAACGC CTTCGACTAT GTCGTCGTCG ACCTTGCGGC GCTCGCCCCC
GTCGTCGACG CGAAAGCCTT TGCGCCGCTG GCCGACGGCA TCCTCTTCGT GGTCGAGTGG
GGAAGAACGC CTTCGCGCCT CGTGCGCGAT CTGCTCAACT CGGAACCGCT GATCAATTCG
AAAGTGCTAG GTGTGATCCT CAACAAGACG GACATGAACG AGCTGGGCAA ATACAGCGAT
TTCGACGGGG CAGAAAAGTA CCGCCACCGC TACGGCAAAT ACTACATAGA AAACAGTTTC
ACGGACAATC AGAACACCGC CGCTTGA
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| Protein sequence | MNRTAPMKQR SVPLSSIMPS EEQSDGFIDL DRLVAAVFRR ARLVTAFVVL FIALGAAYLL
FATPYYTSMT QILLDENLSK YAEEEPVPVN SQMLDTQIAS AVEILKSGEL ALRVVDKLKL
SENETILNPP RSPVDVVKEW LKTATGLFAG GPEVTEAAAR NGRRQKAAAI IQQSLAVERV
SRSSVVAVAF RSSDPVLAAT IARGYASAYL TDQLNANFEA TERASVWLQE RLTDLQQRSQ
AAALEVAHYR AENGLTAARG ELMSEQQMAD LNSQLIVAQA DTASASARYN QYKSIVDQGP
ENAVKNATIS SKEGDNSVIR DLRTRYLTVG KREREVSDNF GADHPQAVSL RTEQEDVARQ
IYQELQQLTA SYKNEYEVAQ SREASLRKSI QGIAGKTSDS SEQLVQLREL EQKAAALKTL
YESYLGRYEQ ATQQQTFPIA KARVISEAGV PVSPSSPKKT MTLALSAVLG LMVGGAYAAF
LEFRERTFRL EGDVRSILGH RSFGYVPLLG TRIKKKAQLV HAHFGSVKRA DEAVDNTMPF
QRLSRIVVDA PRSTFAETFR NAKLACDQML AGSESRVIAI ASALPDEGKS IIAANFAALL
AASGKRTLLI DADIRKPGLT QMITPAPRTG LVETLTGEAT WPAGIKVDQR TKLAILPAGG
ASHQRHQSNE LLASPGMANL IENARNAFDY VVVDLAALAP VVDAKAFAPL ADGILFVVEW
GRTPSRLVRD LLNSEPLINS KVLGVILNKT DMNELGKYSD FDGAEKYRHR YGKYYIENSF
TDNQNTAA
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