| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4871 |
|---|
| Symbol | |
|---|
| ID | 5318918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1373571 |
|---|
| End bp | 1376048 |
|---|
| Gene Length | 2478 bp |
|---|
| Protein Length | 825 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776656 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001313588 |
|---|
| Protein GI | 150376992 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR01375] sarcosine oxidase, gamma subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.862382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.731807 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAGG AATTTCCAAC GCAGGCGCGC GTCGTTATTA TCGGCGGCGG TATCATAGGC
TGTTCGGTTG CCTATCATCT CACACAGCTT GGCTGGACCG ACGTTGTCCT CCTTGAACAG
GGTCAACTCA GCGGTGGAAC CACCTGGCAT GCTGCGGGTC TCGTCGGACA GTTGCGCAGC
CATGCCAACA TGACCGGCCT CATCCGGTAT TCGACGCAGC TCTACAGCGA GCTCGAGGCA
GAGACAGGTC TTGCGACCGG ATGGAAGAAT TGTGGCTCGC TTGCCGTCGC CCGCACGGCC
GACCGCATGA CCGTGCTGAA GCGGACCGCC GCCTCGGCCC GGGCCCAAGG GGTCGCCGTC
GAGGTGATTT CGCCCCGCGA AGCAGCCGAT CTCTGGCCGG TGATGGCGGT AGAGGATCTC
GTCGGCGCCG TCTGGCTCCC GGGAGACGGC AAGGCCAATC CGACGGACCT CACGCAGTCC
CTGGCCAAGG GCGCGCGCAA TCGCGGTGCC CGTATTATCG AGCGGGTGCG CGTGACCGGG
ATAACGGCCA AGGACGGGAC GGTCCGCGGA GTCGAGACGG ATCGGGGCAG CATCGCCGCT
GAAATCGTCG TCAATTGCGC CGGCCAATGG GCGCGCAAGG TCGGGCTGAT GTGCGGCGTG
ACCGTACCGC TGCACTCCGC CGAACACATG TATATCGTCA CGGGCAAGAT CGAGGGCGTG
CATCCGGACC TGCCTGTACT GCGCGATCCC GATGGCTACA TCTATTTCAA GGAGGAGGTC
GGCGGTCTCG TCATGGGCGG CTTCGAGCCG GAGGCCAAGC CCTGGGGCAT GAACGGCATT
CCGGACGATT TCGAATTCGC ATTGCTGGAA GATGACTGGG ACCAGTTCGA AGTCCTCATG
CAGAATGCAC TTATACGGGT ACCGCAACTC GAAACGGCGG AGGTTAGAAA GTTCTACAAC
GGTCCGGAAA GCTTCACCCC GGACAACAAT TTCATCCTCG GTGAGGCACC GGAACTGCGC
AACTTCTATG TCGGTGCCGG CTTCAACTCC ATGGGGATCG CCAGTGCCGG AGGCGCCGGG
CGGGCGCTTG CGGAGTGGAT CGTCAATGGT GCTCCGACGA TCGATCTCTG GCCGGTGGAC
ATTCGCCGTT TCGCGCGCTT CAACAACAAT CCACGCTGGC TGCATGATCG GGTGAAGGAA
ACGCTTGGCC TGCATTATGC CATGCCATGG CCGAACCGCG AGTTGCACAC GGCACGGCCC
TTCCGGCGCT CGCCGCTTTA CGACCGGCTT GCCTCAAGGG GTGCGTGTTT TGGGTCGAAG
ATGGGTTGGG AGCGCGCCAA CTGGTTCGCC GAAGCGGGCC AGGAAGCGGA AACGGACTAC
GCCTTCGGTC GCCAGAATTG GCACGAAGCG GTAAAGCGTG AGATGAGGGC GACGCGCCAG
GCCGCTGGAA TCTTTGATCA AACCTCTTTC GCCAAATTGC TCGTGCAGGG GCGGGATGCA
GCAAAGGCTC TCAACCGCAT CTGCGCCGCC GATATTGATG TCGAGATCGG CCGTTCAATA
TACACCGGCA TGCTCAACGC GCGCGGCGGC TATGAAAGCG ACCTGACGGT GATGCGGCTT
GCACCCGATC GGTTCCTCAT CGTGACCGGA TCGGCACAAG CCGTGCACGA TGCAGACTGG
ATACGCAGAA ATATCCCGGT GGATGCGCAT GTCACCCTGA CCGATGTGAC GTCGTCCTAT
GCCGTGCTGG CGCTGATGGG GCCGAACGCG CGCGACATCC TCGGACGGAT CACCTCTGCC
GATCTTTCGA ACGCGGGTTT TCCCTTCTCG ACCATATGTG AGATCGACAT CGGCTATGCG
ACGGCCTTCG CCAACCGCAT GACCTATGTC GGCGAACTCG GCTGGGAGCT GATCGTACCC
AGCGAATTCG CGGTGGGCGT GTATGAGGCG CTACACGAGG CTGGTCGTGA CCTCGGGCTC
ATCGATTGCG GCTATTACGC TCTCGAGGCA CTGCGTATCG AGAAAGGCTT CCGTGCCTGG
AGCCGCGAGT TGACGCCCGA CATCAATCCC TATGAAGCGG GGCTCGCCTT TGCCGTATCG
CTCGACAAGC CGGGTGGCTT CATCGGCCGC GAGGCATTGG TCCGCGCCAG GCAGGCCGGC
CCCCCTGTCA AGCGGATCGT GCAGTTCACC TTGGATGATG CAGAGCCGAT GCTTTGGGGC
GGCGAACTCA TCCTGCGCGA CGGCAAGCCC GTCGGCGAGG TCAGGTCGGC TGCCTATGGC
CACACGCTTG GTCGCTCGGT GGCACTCGGA CTCATCGAAC ATGATGAAGG CGTCGGCCGG
GAGTTCATCG GAAACGGGCA TTTCGAGATC GATCTTGCAG GTGACCGCCA GTCCGCCACC
GCTCACCTGA AGTGCCCCTA CGACCCGAAG TCCGAGCGCG TAAGGGTAGA TGCTGATGAA
CCGCGGGCGG CAGCCTGA
|
|---|
| Protein sequence | MPQEFPTQAR VVIIGGGIIG CSVAYHLTQL GWTDVVLLEQ GQLSGGTTWH AAGLVGQLRS
HANMTGLIRY STQLYSELEA ETGLATGWKN CGSLAVARTA DRMTVLKRTA ASARAQGVAV
EVISPREAAD LWPVMAVEDL VGAVWLPGDG KANPTDLTQS LAKGARNRGA RIIERVRVTG
ITAKDGTVRG VETDRGSIAA EIVVNCAGQW ARKVGLMCGV TVPLHSAEHM YIVTGKIEGV
HPDLPVLRDP DGYIYFKEEV GGLVMGGFEP EAKPWGMNGI PDDFEFALLE DDWDQFEVLM
QNALIRVPQL ETAEVRKFYN GPESFTPDNN FILGEAPELR NFYVGAGFNS MGIASAGGAG
RALAEWIVNG APTIDLWPVD IRRFARFNNN PRWLHDRVKE TLGLHYAMPW PNRELHTARP
FRRSPLYDRL ASRGACFGSK MGWERANWFA EAGQEAETDY AFGRQNWHEA VKREMRATRQ
AAGIFDQTSF AKLLVQGRDA AKALNRICAA DIDVEIGRSI YTGMLNARGG YESDLTVMRL
APDRFLIVTG SAQAVHDADW IRRNIPVDAH VTLTDVTSSY AVLALMGPNA RDILGRITSA
DLSNAGFPFS TICEIDIGYA TAFANRMTYV GELGWELIVP SEFAVGVYEA LHEAGRDLGL
IDCGYYALEA LRIEKGFRAW SRELTPDINP YEAGLAFAVS LDKPGGFIGR EALVRARQAG
PPVKRIVQFT LDDAEPMLWG GELILRDGKP VGEVRSAAYG HTLGRSVALG LIEHDEGVGR
EFIGNGHFEI DLAGDRQSAT AHLKCPYDPK SERVRVDADE PRAAA
|
|---|
| |