| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4676 |
|---|
| Symbol | |
|---|
| ID | 5318133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1189623 |
|---|
| End bp | 1191098 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640776474 |
|---|
| Product | succinic semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001313406 |
|---|
| Protein GI | 150376810 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.928046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0486127 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCCTGA CGCCTGCACT CACCGGACAC ATCCGCGAAC CGAAGCTTTT CGCGTCGCTC
GATAGCGTCG CCCTGCCCGC AGGAGAATGG GCCGGTCCGA CTTTCGACGT CTTCAATCCT
TCGACCGGCG AATTGCTGGC GAAGCTTCCG GATATGGGCA TCAAAGAGGC GCGCGCTGCG
ATCGACGCCG CCGCCCTTGC CCAACCTTTA TGGGCCGGCA AGCCGGCCAA GGACCGCAGC
ATCGTCCTGC GTCGCTGGCA CGACCTGATC GTCGAGCACG TCGACGACCT CGCGGCGATT
CTGACGGCTG AAATGGGCAA GCCCGTCGGC GAGGCGAAGG GCGAGGTCCT TCACGCGGCA
TCCTACATCG AGTGGTATGC GGAAGAAGCC AAGCGCGTCT ACGGCGAGAC CTTCCCTGCG
CCCGCCAACG ATCGCCGTAT GCTCGTCATC AAGCAGCCCG TCGGCGTGGT CGGCACCATC
ACGCCCTGGA ACTTCCCGGC TTCGATGGTT GCGCGCAAGA TTTCTCCGGC GCTTGCCGCC
GGCTGCACGA TTGTCCTGAA GCCGGCCGAG CAGACGCCGC TGGTGGCCGG GGCCATGTTC
GCGCTCGCCG AACAAGCAGG CTTTCCGGAA GGCGTCCTCA ATCTCCTATA CGCATCCGAG
GGTGCACCTA TCGGCCGGGA GCTCTGCAGC AATCCCAGGA TCCGCAAGAT CAGCTTCACC
GGATCGACCG AGGTCGGGCG CCTTTTGATG CGGCAATGTT CCGACCAGAT CAAGAAAGTC
AGTCTCGAAC TCGGCGGCAA TGCCCCCTTC ATCGTCTTCG ACGACGCCGA TATCGACGAG
GCGGTGGACG GTGCGCTTCA GGCCAAGTTT CGCAATGCCG GCCAGACCTG CGTTTCAGCG
AACCGCATCT ACGTGCAAAC CGCGGTGCAC GACGCCTTCG CCGAGAAGTT CGTCACCCGC
GTGCGAGAGC TCACCGTCGG CGACGGCTTT GCCCCCGGCG TTACGATCGG CCCGATGATC
GACGCCCATG CGATCGAGAA GATCGAGGCG CATGTGTCCG ATGCCATTGC CAAGGGTGCC
GAAGTGCGCT GCGGCGGCAA CCGCATCGGG ACGGCCGGCA CCTTCTTCGA ACCGACCGTG
CTTACAGGCA TCTCGCACGA CATGCGTGTT GCCCAGGAAG AGACATTCGG GCCGATCGCC
CCGATCATCC GCTTCGACAG CGCCGAGCAG GTCGTGGCCG AGGCAAACGA CACGATCTAT
GGCCTTGCGG CCTACTTCTA TGCCGAGAAC CTCAAGCGGG TCTGGCATGT TGCCGAGGCG
CTGGAATACG GAATGGTCGG GATCAATACG GGCCGAATGT CTTCAGAGGC CGCTCCCTTC
GGCGGCATCA AGCAATCCGG TATCGGCCGC GAGGGTTCCC GCCACGGTCT CGAAGACTAT
CTGGAGATGA AATATCTCTG CATGGGCAAT ATCTGA
|
|---|
| Protein sequence | MALTPALTGH IREPKLFASL DSVALPAGEW AGPTFDVFNP STGELLAKLP DMGIKEARAA
IDAAALAQPL WAGKPAKDRS IVLRRWHDLI VEHVDDLAAI LTAEMGKPVG EAKGEVLHAA
SYIEWYAEEA KRVYGETFPA PANDRRMLVI KQPVGVVGTI TPWNFPASMV ARKISPALAA
GCTIVLKPAE QTPLVAGAMF ALAEQAGFPE GVLNLLYASE GAPIGRELCS NPRIRKISFT
GSTEVGRLLM RQCSDQIKKV SLELGGNAPF IVFDDADIDE AVDGALQAKF RNAGQTCVSA
NRIYVQTAVH DAFAEKFVTR VRELTVGDGF APGVTIGPMI DAHAIEKIEA HVSDAIAKGA
EVRCGGNRIG TAGTFFEPTV LTGISHDMRV AQEETFGPIA PIIRFDSAEQ VVAEANDTIY
GLAAYFYAEN LKRVWHVAEA LEYGMVGINT GRMSSEAAPF GGIKQSGIGR EGSRHGLEDY
LEMKYLCMGN I
|
|---|
| |