| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4596 |
|---|
| Symbol | |
|---|
| ID | 5318506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1095598 |
|---|
| End bp | 1096812 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640776397 |
|---|
| Product | putative membrane-anchored protein |
|---|
| Protein accession | YP_001313329 |
|---|
| Protein GI | 150376733 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4671] Predicted glycosyl transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.576563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.938247 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGGC GCTTCGAGGA TGCCCGCATC CTCATGTACA GCCACGATAC CTTCGGACTC
GGCCATCTCA GACGTTGCCG CGCAATCGCC CATGCCCTGG TGGAAGACTA TAGCGGACTG
CAGGTCCTCA TAATCTCCGG TGCGACCATC GCCGGCGCCT TCGATTACCG CGCGCGCGTC
GACTTCGTGA AGATCCCTAG CGTTATAAAG CTTAGAAATG GCGAATATAC CTCGCTCGAC
CGCCATATCG AATTGCACGA AACGCTGAAG ATGCGGCAGT CGATCATCCG CTCGACCGCG
GAGACCTTTC GGCCGGATAT TTTCATCGTC GATAAGGAGC CGATGGGGCT GCGCGGCGAG
GTCGAAGACA CGCTCGCCTA TCTGAAGACC CACGGCACCA GGCTCGTTCT GGGCCTGCGT
GAAATTATGG ATGCGCCGCA CCTACTCGAA GAGGAATGGA ACCGGCGCGA TACGATGCGA
AAAATCGAGA AGTTTTACGA TTCGGTCTGG GTGTACGGCC CGCCGGACTT TTACGACCCG
CTGGTCGGGC TCGAAGTGCC CTCAGCGGTG CGCGACCGCA TGAACTTTGT CGGCTTCCTG
CAGAGAAGCG TCCCCCAGGA CGCCGTGCCC GGCCATAAAC CGGAAGGCGA CTACATTCTG
GTCACGACCG GCGGCGGCGG CGACGGAGCG GACCTCATCC ACGACGTGAT CCACGCCTAT
CAGGAAGATC CCGAACTCAA GCATAACGCC CTCGTCGTCC TCGGCCCCTA TATGCCGGCA
AAGCAGCGCA ACAAGCTGAT CAAGAAGGGA AGCAAGATCC CTTTCATCAA GATCATCGAG
TTCGACAACC GTATGGAGGA GTTGATCGCC GGCGCCAGGG GTGTCGTATC GATGGGCGGC
TACAACACCT ATTGCGAGAT ACTGTCCTTC GACAAGCCGG CTCTGATCGT GCCGCGCCTG
CAGCCTCGCG AAGAACAGTT GATCCGCGCC CAACGTGCCT CCGCGCTCGG CCTCATCGAC
ATGCTGCTTC CTCAGGAAGC GGAAGAACCT TTACGTTTTG CCGCGGCGCT CAAGGCACTG
CCGCAGCGTC CGCCGCCATC GCTCCGCGCC AAGGGTTTGA GGCTGGAAGG CCTCGTGCAC
ATATCCGACA TCGTCGGCGA ATGGCTCGAC CATCGGTCGA AAGAGCATTT GGCCGTCGTG
AAAAGATCGA ACTGA
|
|---|
| Protein sequence | MTRRFEDARI LMYSHDTFGL GHLRRCRAIA HALVEDYSGL QVLIISGATI AGAFDYRARV
DFVKIPSVIK LRNGEYTSLD RHIELHETLK MRQSIIRSTA ETFRPDIFIV DKEPMGLRGE
VEDTLAYLKT HGTRLVLGLR EIMDAPHLLE EEWNRRDTMR KIEKFYDSVW VYGPPDFYDP
LVGLEVPSAV RDRMNFVGFL QRSVPQDAVP GHKPEGDYIL VTTGGGGDGA DLIHDVIHAY
QEDPELKHNA LVVLGPYMPA KQRNKLIKKG SKIPFIKIIE FDNRMEELIA GARGVVSMGG
YNTYCEILSF DKPALIVPRL QPREEQLIRA QRASALGLID MLLPQEAEEP LRFAAALKAL
PQRPPPSLRA KGLRLEGLVH ISDIVGEWLD HRSKEHLAVV KRSN
|
|---|
| |