Gene Smed_4448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4448 
Symbol 
ID5318600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp932533 
End bp933114 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content57% 
IMG OID640776250 
ProductXRE family transcriptional regulator 
Protein accessionYP_001313183 
Protein GI150376587 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0311191 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCTCTG ATACGCTGTC TAACGAGCTC CAGCGCTACG CAATCGGCCC TCGTATTAAG 
GCCCTGCGCC TGAGAAAGAA GCTGGGACTG GTGCAGTTGG CTGGCCATAC AGGGCTCTCG
CCTGCGATGC TCTCGAAGAT CGAGCGCGGG CAGATGTTTC CAACACTGCC CACGCTGCTT
CGGATCGCCA TGGTTTTCGG CGTCGGCCTC GATCATTTCT TCAATGTGGA TAAGGAGGAG
CCGCTCATCG CGATTGTCCG GAAGGAGCAG CGTCTCAAAC TTCCTAGCCC GCCAGGCGAG
AAGCACCCAG CCTTTCTATT CGAAAGCCTG GACTATCCCG CTTCTGACCG CCGCATGGAT
GCGTTCTACG CCGAATTCCC GGTCGATTCG CCGCCCTCAG AGCCGCATCA ACATGGCAGC
GCTGAGTTCA TCTACGTGCT CAGCGGTCGG CTTATAGTCA ATGTTAATGG CAAGGAGTGC
GCGCTGGATA CGGGGGACGC TGTGTATTTC GACTCGAGCG TTCCGCACAG TTACCGCCAT
GAAGGCAAAG AAATCTCAAC CGCGATTGTT GTGACTTCAT AG
 
Protein sequence
MLSDTLSNEL QRYAIGPRIK ALRLRKKLGL VQLAGHTGLS PAMLSKIERG QMFPTLPTLL 
RIAMVFGVGL DHFFNVDKEE PLIAIVRKEQ RLKLPSPPGE KHPAFLFESL DYPASDRRMD
AFYAEFPVDS PPSEPHQHGS AEFIYVLSGR LIVNVNGKEC ALDTGDAVYF DSSVPHSYRH
EGKEISTAIV VTS