| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4328 |
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| Symbol | |
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| ID | 5319177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 825769 |
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| End bp | 827073 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776133 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001313066 |
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| Protein GI | 150376470 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0170975 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGATAA AGAGACGTGA TTTTCTCGCA ACCTCCGCCG CACTCGCCGG CGTTGCGGGT
CTGGGCATCC GCCCGTCCTT CGCGCAGGCC GAGCCGAGCT ACAAGCCGGA GGAGGGCGCG
AGCCTCAGGC TTCTCAGATG GACGCCTTTC GTCAAGGGCG ACGAGGACGC CTGGATCGCC
AATACCAAGA AATTCACTGA GACGACGGGC GTCGAGGTCC GCATCGACAA GGAAAGCTGG
GAGGATATCA GGCCGAAGGC GGCGGTCGCC GCAAATGTCG GCTCCGGTCC GGACATGGTG
ATGTGCTGGT TCGACGACGC GCATCAATAT CCCGACAAGC TCGTCGACGT GACGGAGCTC
GCTGATTATC TCGGCAATAA ATATGGCGGA TGGTACGACG GCCTGAAGGG CTATGCCAGC
CGCGAGGGGC AGTTCATCGC CATGCCGTTG GCCGCGATCG GTAACGCCGT CTGCTACCGC
GAAAGCCACA TGAAGGCGGC CGGGTTCAGC GAGTTCCCGA AAGACACGGC CGGCTTCCTC
GAGCTCTGCA AGGCTCTCAA GGCAAAGGGA ACTCCCGCCG GTTTCCCGCA TGGAAAGGCC
GTCGGCGACG GCAACAACTA CGCTCATTGG CTGTTGTGGA GTCATGGCGG CAAGATGGTC
GACGAGAGCG GCAAGGTCAT GATCAACAGC CCGGAGACGC TCGCGGCGGT CAACTATGCC
AAATCGCTGT ATGAGACGTT CATTCCGGGC ACGGAGAGCT GGCTCGACAT CAACAACAAT
CGTGCCTTTC TCGCCGGGCA GGTATCGCTT ACGGCAAACG GCGTCTCGCT CTACTATGCG
GCCAAGAAGG ACCCCGCGCT TGCCGAACTT GCGGCTGACA TCCGCACGAC CAACTTCCCG
ATCGGTCCGG TCGGCCAGAG CGTCGAACTG CATCAGACGA GTTCGATCCT GCTCTTCAAG
CACAGCAAGT ATCCGGAAGC TGCCAAGGCA TATCTGAAGT TCATGATGGA AGCCGACCAG
ATGAACGCCT GGATCGAGGG GTCAAGCGCC TATTGCTGCC AGCCGTTGAA AGCGTTCGCC
GATAACCCGG TCTGGACCTC GGACCCGATT CACGCGCCCT ATGCGCGGGC CTCGGAGACG
CTGCGGCCGA ACGGCTATGC CGGTCCACTC GGCTATGCCT CGGCGGGCGT CATGGCTGAC
TACGTACTGG TAGACATGTT CGCAAGTGCT GTTACCGGCC AGGCAACGCC GGAGGATGCG
ATCGTCGAGG CCGAACGGCG GGCGAACCGC TACTATCGGG TCTGA
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| Protein sequence | MPIKRRDFLA TSAALAGVAG LGIRPSFAQA EPSYKPEEGA SLRLLRWTPF VKGDEDAWIA
NTKKFTETTG VEVRIDKESW EDIRPKAAVA ANVGSGPDMV MCWFDDAHQY PDKLVDVTEL
ADYLGNKYGG WYDGLKGYAS REGQFIAMPL AAIGNAVCYR ESHMKAAGFS EFPKDTAGFL
ELCKALKAKG TPAGFPHGKA VGDGNNYAHW LLWSHGGKMV DESGKVMINS PETLAAVNYA
KSLYETFIPG TESWLDINNN RAFLAGQVSL TANGVSLYYA AKKDPALAEL AADIRTTNFP
IGPVGQSVEL HQTSSILLFK HSKYPEAAKA YLKFMMEADQ MNAWIEGSSA YCCQPLKAFA
DNPVWTSDPI HAPYARASET LRPNGYAGPL GYASAGVMAD YVLVDMFASA VTGQATPEDA
IVEAERRANR YYRV
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