Gene Smed_4221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4221 
Symbol 
ID5319295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp704147 
End bp704872 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content65% 
IMG OID640776026 
ProductABC transporter related 
Protein accessionYP_001312959 
Protein GI150376363 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGCAG CGCCGCTTGA GGTCGACAAT CTCTCCGCCG GTTATGGGCC GACGCGGGTG 
CTGGAAGGAA TTTCCTTTTC CGTGTCTGCC GGCGCGAAGC TTGCGGTTCT CGGGCGTAAT
GGCATGGGCA AGACGACGCT GCTCGCTACG CTCGCCGGCC AGACGCGCCG TTATGACGGG
CGCATCCGTA TCGGCGAGGC CGATGTCACC GCGCTGTCGA GCGCATCACG CGCGCTGAAA
GGCCTCGGCT TCGTGCCGCA GGCGCGCTGC GTTTTCCCGT CGCTGACGGT CGAGGAAAAT
CTCTTCGTCG GCCTCAAGGG CCGTGCGAAG ACGGCGCTGA ACGAAGCTTA CGAGATGTTT
CCGCGCCTCT ATGAGAGGCG CAGGAACTTG GGCTCGCAGC TTTCGGGCGG CGAGCAGCAG
ATGCTGTCGA CAGCCCGCTC GATCCTCGGC CGGCCATCCA TTCTGCTTCT CGACGAGCCG
CTCGAAGGAC TGGCCCCGGT CATCTGCGAG GAACTGATGA AAGCCTTCGC CCAGCTTGCA
AGGACCGGCG ATATGACGAT CCTGCTCGTC GAGCAGCGCA TTCGGAGCGC GCTCGATTTC
GCCGACCGGG TGATCATCCT GGAGCGCGGG CGGCTCGCAT GGAGCGGAAC GCCGAAGGCG
CTTGTGAAGG AGCCCGCCAC GGTCGAGCAG CTGCTGGGGA TTGGCGGGTT GGCGCCGAGC
CCTTGA
 
Protein sequence
MPAAPLEVDN LSAGYGPTRV LEGISFSVSA GAKLAVLGRN GMGKTTLLAT LAGQTRRYDG 
RIRIGEADVT ALSSASRALK GLGFVPQARC VFPSLTVEEN LFVGLKGRAK TALNEAYEMF
PRLYERRRNL GSQLSGGEQQ MLSTARSILG RPSILLLDEP LEGLAPVICE ELMKAFAQLA
RTGDMTILLV EQRIRSALDF ADRVIILERG RLAWSGTPKA LVKEPATVEQ LLGIGGLAPS
P