| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4163 |
|---|
| Symbol | |
|---|
| ID | 5319192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 637752 |
|---|
| End bp | 638837 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640775968 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001312901 |
|---|
| Protein GI | 150376305 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.308021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.489611 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACG GCACCGGCAA TAAGAGCGTC GTGCTCAGCG ATATACGCAA GAGCTACGGC
AACCTGGAGG TCATCCATGG GATCGACCTG ACGATCGAGG AAGGCGATTT CGTCGTCTTT
GTCGGCCCGT CCGGCTGCGG GAAATCGACC CTGCTGCGGA TGATCGCAGG GCTCGAGGAG
GTGACGGAGG GAGAGATCGC AATCAAGGGC AGGGACGTGA CAGATCTCGA CCCTTCCGAG
CGCGGCATAG CTATGGTCTT CCAGTCCTAC GCGCTCTACC CGCATATGAG CGTTGGCGAA
AATCTCGGCT TCGGACTCAA GATGGCTCGG ACGGATCCGG CCGATATCGA GCGCCGCGTC
GCGCAGGTCT CGGCGATCCT AAAAATCGAT CCCCTGCTTG ACCGAAGGCC GGGCCAACTT
TCGGGCGGGC AGCGCCAGCG CGTGGCGATC GGCCGGGCGA TCGTGCGCAA GCCGGACGTA
TTTCTGTTCG ACGAGCCGCT TTCCAACCTC GATGCCGAGC TGCGCGTTTC GATGCGCATC
GAGATCGCAC GGCTCCACCG CGAACTCGGC AATACCATGA TTTACGTCAC CCACGATCAG
ACGGAGGCGA TGACGCTCGC CGACCAGATC GTCGTTCTGC GTGACGGCCG GATCGAGCAG
ACCGGCAGCC CCCGCGAGGT TTACGAGGAT CCCGCCAACA TGTTCGTTGC GGGTTTCATC
GGTTCGCCGC GCATGAATTT CCTTGAGGCC GAATGGCAGG GAGACGGAAC CGTCCACATC
GGCAGCGCAG CGCTTTGGGC TCCGATCGAT GGCAGCAGTC TGGCTCCGGG GGATCGCCTG
AGGCTCGGGA TGAGGCCGGA GCACCTCACG GTCTGCGAAC CCGGCGCGGA GCGGATCGCC
GCCCAGGTCG AATTCTCGGA ATATCTCGGC GGCACGCGCT ATCTCTATTG CCAACTTGAG
GACGGTCAAA GCCTTGTCGT CGAACAACGC GAAGGGCCGG ACTGGCAGGT GGGGGAGAGG
CTATCGTTTT CCGTGCCAGA GGACAGAAGA CGGTTCTTTG CCGGGGACGG CCGACGTTTG
CGTTAG
|
|---|
| Protein sequence | MANGTGNKSV VLSDIRKSYG NLEVIHGIDL TIEEGDFVVF VGPSGCGKST LLRMIAGLEE
VTEGEIAIKG RDVTDLDPSE RGIAMVFQSY ALYPHMSVGE NLGFGLKMAR TDPADIERRV
AQVSAILKID PLLDRRPGQL SGGQRQRVAI GRAIVRKPDV FLFDEPLSNL DAELRVSMRI
EIARLHRELG NTMIYVTHDQ TEAMTLADQI VVLRDGRIEQ TGSPREVYED PANMFVAGFI
GSPRMNFLEA EWQGDGTVHI GSAALWAPID GSSLAPGDRL RLGMRPEHLT VCEPGAERIA
AQVEFSEYLG GTRYLYCQLE DGQSLVVEQR EGPDWQVGER LSFSVPEDRR RFFAGDGRRL
R
|
|---|
| |