| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4110 |
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| Symbol | |
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| ID | 5318545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 574417 |
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| End bp | 576495 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640775917 |
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| Product | transketolase domain-containing protein |
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| Protein accession | YP_001312850 |
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| Protein GI | 150376254 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
[COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGG CCGCACTTAA AAAGGACCGG CGCAACGCAC CGGACGAGAA CATCGACTGG
AAGCGTGTCG TGCAGCTTCT GCTTCTGTCA CGCGAACTCG ACGAGATGGA GGAACGACGC
CTCGTCCCCG AGAAAAAGGT TCTCTACCAG TTTTCGGCGC GCGGCCATGA CATGGCGCAG
ATTCTCCTGG GTCTGCAGCT GACGGGCAGG CACGATGCGG CTTGCGGCTA TTACCGCTCG
CGCCCGCTGC TGCTTGCACT GGGCGTCGAT CCCGCCGACG CGCTCGGCTC GGCGATGGGA
CGCGCGGGAG GGTATTCAGA TGGGCGCGAT ATCGGCGTGG TCTTCAACTA TCCCAATCCG
GATGGCGCCT CGGCGCTGCC AATGTGCGGC GGCGTCGGCA GCCAGTACAC GCCGACGGCC
GGCTGGGCGC AGGCGATTAC CTATTTCAAC CAGGTTCTCG GGAACGAGGA ATACCGGGAG
GACATTGCCG TCGTCCTGGG CGGCGACGGT TCGGTCGCCT CGAACGGGTT CTGGTCGGCG
CTGACGATCG CGACGACGCA AGGCTTGCCG CTGCTCTTCT ATATCGAAGA CAACGGTTTC
GGCATTTCCG TCCCCTCGAG CTTCCAGACG CCCGAGGGCA ACATTGCCGG CAATCTCGCC
GGCTGGAAGA ACCTGACCGT CCTCGACGGC GACGGCTCGG ACCCGGCAGA AGCAGCCCGG
TTGACGAAAA GCGCGGTGGA ACGCGTACGT GAAGGGCGGA TGCCGGTGCT GCTCCGGCTT
GAGGTACCCC GCCTCGAAGG GCACAGTTTC CAGGATACCC AGGCCTACAA GAGCGAGGAG
CTCGTGAAGA GCGAATGGGC GCATGACCCG CTGCCGCGGC TAAGGGACCA TCTTGTGCCC
GCGATGTTGA CCGCCGAGGA ATGGAACGAC GCGGCGCGAG CCGCGAAGAG AGAGGCGGAG
CGGGCGCGCA TCGAGGCTGA ATCCAGGCCC GTCGCCGATC CCGAGACCGT CACCGGCAAC
GTCTTTTTCG AAGGGCGGAT GCAGATCATG GGCGGGCAGC ACTGTGCCGG CTACTGTCCG
CCGGAAACGA CGGAGAGGGC GACAAGCGCC GGTGAGCGGA TCAACATGGT GACGGCGATT
CGCCGCACGC TAGACCACGA GATGTCGGTG AACGAGCGGG TCGTCCTCTT TGGGGAGGAC
ATCGGCGCGA AGGGCGGCGT TCACGCGGTG ACCCTCGGCC TGCAGGAAAA ATATGGTGTC
GTGCGCGTCT TCGACACGTC GCTTTCCGAG GAGGGCATCA TCGGCCGGGC GGTCGGGATG
GCTCTTGCGG GCCTCGTGCC CGTCCCGGAA ATCCAGTTCC GCAAATATGC CGAGCCTGCA
ATCGAGCAGC TGAACGACTG CGGCACGATC CGCTGGCGAA CCAGCAATCG TTTCGCCGCG
CCGATCATCG TGCGGATGGC CGGCGGCTTC TTCAAATGCG GCGATCCGTG GCACAGTCAG
ACGAATGAGG TCGCCTTCGT TCACCAGCCC GGCTGGAAGA TCGCCGTTCC CTCCAATGCC
GAGGATGCGG TGGGGCTGCT GCGCACCGCA TTGCGGGGAA ACGATCCGGT GATCTTTTTC
GAACACCGGG CCATGCTCGA TCATCCCTGG GCGCGGCGAC CCTACCCCGG CGATGCTTTC
GGCCTGCCTT TCGGCAAGGC GAAGTTTACG CGCGAAGGCG GCGACATCAC CATCGTCACG
TGGGGTGCCA TGGTCCCGCG TTGCGAAGCG GCGGCAGAGG GTATCTCCGC CGACGTGATC
GATCTGAGAA GCCTGATGCC CTGGGACAGC GAGGCGGTCA TCGCCTCAGT ACGCCGTACC
CGCCGGTGCC TCATCGTCCA CGAGGACCTC GGAACGGCAG GTTTCGGCGC GGAGATTGCC
GCCGTCGTCG CCCAGGAAGC CTTCATCGAT CTCGATGCGC CGATCTCGCG CTTGACCATG
CCCGACATTC CGAGCCCCCA TAATCCCGTC CTGCTCGACT GGGTCGTTCC CTCGCCGGAA
CGGATACGCA AGAAGATCAA CGACCTTCTG GAGTTCTGA
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| Protein sequence | MTQAALKKDR RNAPDENIDW KRVVQLLLLS RELDEMEERR LVPEKKVLYQ FSARGHDMAQ
ILLGLQLTGR HDAACGYYRS RPLLLALGVD PADALGSAMG RAGGYSDGRD IGVVFNYPNP
DGASALPMCG GVGSQYTPTA GWAQAITYFN QVLGNEEYRE DIAVVLGGDG SVASNGFWSA
LTIATTQGLP LLFYIEDNGF GISVPSSFQT PEGNIAGNLA GWKNLTVLDG DGSDPAEAAR
LTKSAVERVR EGRMPVLLRL EVPRLEGHSF QDTQAYKSEE LVKSEWAHDP LPRLRDHLVP
AMLTAEEWND AARAAKREAE RARIEAESRP VADPETVTGN VFFEGRMQIM GGQHCAGYCP
PETTERATSA GERINMVTAI RRTLDHEMSV NERVVLFGED IGAKGGVHAV TLGLQEKYGV
VRVFDTSLSE EGIIGRAVGM ALAGLVPVPE IQFRKYAEPA IEQLNDCGTI RWRTSNRFAA
PIIVRMAGGF FKCGDPWHSQ TNEVAFVHQP GWKIAVPSNA EDAVGLLRTA LRGNDPVIFF
EHRAMLDHPW ARRPYPGDAF GLPFGKAKFT REGGDITIVT WGAMVPRCEA AAEGISADVI
DLRSLMPWDS EAVIASVRRT RRCLIVHEDL GTAGFGAEIA AVVAQEAFID LDAPISRLTM
PDIPSPHNPV LLDWVVPSPE RIRKKINDLL EF
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