| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4018 |
|---|
| Symbol | |
|---|
| ID | 5318827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 474685 |
|---|
| End bp | 475539 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640775826 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_001312759 |
|---|
| Protein GI | 150376163 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.772645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTTG ACTTGCGTGG TCCCTCCGTA CCAGCCAGCA GCCGGCTGCG CAGCGTTTTG
CCTAAATTGT CGGACGCCGA ACGGCGGGTG GCGCTATGGA TGCTGAAGAA CGTCGACCTG
AGCATTCGGC AGTCCATGTC GGCGATCGCC CAGGCGACGG ATGTCAGCGA CACGACCGTC
TTGAGGATGT GCCGCACCGC CGGCTTCGAA GGTTTCACCG ACCTGAAACT GGCTTTGGCG
CAAGAACCTC GCGAAGCAAT CGAACATAGC TCGGGAGAAC CGGAGGCGAG CGCCCTGCAG
GCAGCGGGCC GGCTGTTTCG CGCGATAACT CAGGCGCTCA ACGACACATT CGGGGTGCTC
GACGAGGCGA CCTTCGCAAA AGCGCTGGAT CTGGTCGCCA ATGCGAAACA CATAATGGTC
GGGGGCGTCG GTGGTTCGGG TATCGTCGCC CAGGCATTCT ACCAGCGATG TATCCGGCTC
GGCCTGCGCT GCGACGCGCC GATCGATTCA CAATTGCAGA TCATGCATGC CGCACTCACC
GGCCCGGGGG ATCTGGTGGT CGCTATCTCC TATTCCGGGA TCACGAGCGA TCCGGTCCTC
GTGCTTCAGG AAGCAAAAGC CCGGGGCGCT TCCACGCTCT GTATTACCGG CAACAGCAGT
TCCGCGCTGG CGCGCCTGGC GGATGTCGTG CTTGTCAGCG TTTCCCATGA ACAAGGCAGC
GAACCCATGG CGGCGCAAAT CGCCCAGATG ACCCTGGTCG ACGCGCTTTA CGCGGCGCTC
GTCGCGCGAA ATCCCGAGCC GGCCCAACTC ACCGAGGAAC GCATGGTCAA CGCAATCCTT
CCCAAGTCAA TCTAG
|
|---|
| Protein sequence | MTVDLRGPSV PASSRLRSVL PKLSDAERRV ALWMLKNVDL SIRQSMSAIA QATDVSDTTV
LRMCRTAGFE GFTDLKLALA QEPREAIEHS SGEPEASALQ AAGRLFRAIT QALNDTFGVL
DEATFAKALD LVANAKHIMV GGVGGSGIVA QAFYQRCIRL GLRCDAPIDS QLQIMHAALT
GPGDLVVAIS YSGITSDPVL VLQEAKARGA STLCITGNSS SALARLADVV LVSVSHEQGS
EPMAAQIAQM TLVDALYAAL VARNPEPAQL TEERMVNAIL PKSI
|
|---|
| |