| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3999 |
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| Symbol | |
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| ID | 5319246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 452531 |
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| End bp | 453904 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640775807 |
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| Product | UbiD family decarboxylase |
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| Protein accession | YP_001312740 |
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| Protein GI | 150376144 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.428522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTTCG GCAGCCAGGA CGTCCGCTAC TTTCTCCGGG AATACCAGAA GGCGTACCCG
GAAGACGTAC TCACCATCGA GGACCACATC ACCGACGACC AGGACGCGAC GGCATTCATC
TGGAGGCTCA ACCAGCAGGG CAAGGCGCCG CTCCTGCATT TCCGGAATGT CGAGGGTATC
GCCTGCGAAG TGATCGCCAA CACCTTCGGT TCGCGCGAGC GTATCGCCCG TATGTTCGGG
ACCTCCCAGG ACCGGTTGCA CGAAGCTTAC CAGGCACGCT CTCGAAAGGC TCTGCCGCCG
CGTCTGCTCG ACAGCGGACC GGTGACCGAA TGCGTCGAAG AAGGCGACAT CGACCTGAAC
ACGCTGCCGA TGCTGAAGCA TTTCGCGACC GACAGGGCGA AATACATTAC CAGCGGCATC
ATCATCGCTG AGCATCCGGA AACCGGGGCC GGCAATCTCA GCTATCACCG CGCCATGATC
CATTCGAAGA ACGAGCTGGC GACGAGCCTG CATTCGCGCG GCCATCTGTG GCGTCTGCTC
AACATGGCAA AGGACCGCGG CGAGAAACTG AGGGTCGCCA TGGTCATAGG CGCACATCCC
CTCTTCATGA TTGCGGCATC GGCGCGCCTT GCATTCGGTG AAGACGAGCG CGACGTCGCC
GGCGGCCTGC TCGGCGAGCC GCTGGAGGTC GTACGGACTC CCAGATATGG CATCCGGGTT
CCAGCCTATG CCGAGATGGT CCTTGAAGGA GTGATCGAGC CCGAAGCCCA GGTTGCCGAA
GGACCCTTCG GAGAGTTTAC CGGCTACTCT TCCGACCGGT CGACAAACAA TCTCTTCCGT
GTCGAAACGT TCCTGCGCCG CAAGGACGCA ATCCTGGTCA GCGTCGCCGG CGGCAACTCG
TCCGAACATC TCAATCTCGG CCGCGTTCCG CGCGAGGCGG AGATGGTCGA AAAGCTGAAG
CAGCGTTTCC CGAGCGTAAC GGCGGTCCAC TATCCTGCAT CCGGCACGCA TTTTCATGCT
TATATCGCCC TCAACCAGAC AAGGCCCGGC GAGGCCCGCC AGATCATGCT CGGCCTGCTC
GGCTGGGACG CCTATCTGAA GACCGTCATT GCCGTCGACG CCGACGTCGA CATCACGCAG
GACTCCGAAG TTCTCTGGGC CATGTCGGCT CATTTCCAGC CGCACAGGGA TGTCGTCATC
ATCGAGGGGC TGCCCGGCAA CGCGCTCGAT CCCTCGGCAA CCGGCATCGG CACGACGTCC
CGCATGGGTC TCGACGCGAC ACGCGGGCCT GATTTCCATG GCGTGCTCGC CAGGATCGAC
GACGCCGCCT TCGGCCGCGT TTCTTCGATC CTGGCGAAAC TCGCTCGTCC ATAG
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| Protein sequence | MEFGSQDVRY FLREYQKAYP EDVLTIEDHI TDDQDATAFI WRLNQQGKAP LLHFRNVEGI
ACEVIANTFG SRERIARMFG TSQDRLHEAY QARSRKALPP RLLDSGPVTE CVEEGDIDLN
TLPMLKHFAT DRAKYITSGI IIAEHPETGA GNLSYHRAMI HSKNELATSL HSRGHLWRLL
NMAKDRGEKL RVAMVIGAHP LFMIAASARL AFGEDERDVA GGLLGEPLEV VRTPRYGIRV
PAYAEMVLEG VIEPEAQVAE GPFGEFTGYS SDRSTNNLFR VETFLRRKDA ILVSVAGGNS
SEHLNLGRVP REAEMVEKLK QRFPSVTAVH YPASGTHFHA YIALNQTRPG EARQIMLGLL
GWDAYLKTVI AVDADVDITQ DSEVLWAMSA HFQPHRDVVI IEGLPGNALD PSATGIGTTS
RMGLDATRGP DFHGVLARID DAAFGRVSSI LAKLARP
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