| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3989 |
|---|
| Symbol | |
|---|
| ID | 5317915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 441477 |
|---|
| End bp | 442367 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640775797 |
|---|
| Product | dihydrodipicolinate synthetase |
|---|
| Protein accession | YP_001312730 |
|---|
| Protein GI | 150376134 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.459609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGA AAGCTTTCGT CGCACTCGTC ACATGCTTCA ACGAGGACGA GACGATCAAT
TATGCGGCAA CCCGAGCGCA GGTGCGCCGG CAGGTCGCCG CCGGCAACAA CATCATGTGC
GCCGGCACCA ATGGCGACTT CACCGCGCTC ACGCACGAGG AAAAGATCCG CCTAACCGAG
GAGGTGGTCG ACGAGGTCGG CGGCCGCGCA GAGGTCATCG TCAATGCCGG CATGCCGGCG
ACCTTCGAGA CCTTACAGCT CGCACGTGCC TTCGACCGGA TCGGCGTCAG CGGCATTGCC
GTCATTACAC CCTTCTTCAT CGCCTGCACG CAGGATGGCC TGATCCGGCA CTTTTCGACT
GTGGCCGATG CCGTAGAGAC CCCCGTCTAT CTCTACGACA TCCCGGCGCG AACCCAGAAC
CATATAGAAC CAGGGACGGC GCTGAAGCTT TCCGAGCACG GCAATATCGC CGGCATCAAG
GATTCCGGCG GCGCGCAGGA TACGCTCGCG GCCTATCTGC AGGTGGCACG CGACGTGCCG
GGCTTTGAAG TCTATTCCGG CCCCGACCAT CTGGTCCTCT GGTCGCTGCA GAATGGCGCC
GCCGGCTGCA TTTCCGGCCT CGGCAATGCC ATGCCGGACG TGCTTGCCGG TATTCTGAGC
GCATTCAATG CCGGCGACAT CGCCGAGGCT GAACGCCAGC AGTCCATCTA CACTGCCTTC
CGCACCGAAC TTTACGCCCT CGGCTTCCCA CCCGCCCTGG TCAAGCGCGC TCTCTATCTG
CAGGATTCCT CCGTCGGCGC CTCCCGGCAG CCGGCTTTGC TCCCGAACGA CGAGCAGGAC
GCAAAGATAC GAGAGATTCT GGTGCGGTTT TCCGTCCCCA TGCCGCTCTA A
|
|---|
| Protein sequence | MSKKAFVALV TCFNEDETIN YAATRAQVRR QVAAGNNIMC AGTNGDFTAL THEEKIRLTE
EVVDEVGGRA EVIVNAGMPA TFETLQLARA FDRIGVSGIA VITPFFIACT QDGLIRHFST
VADAVETPVY LYDIPARTQN HIEPGTALKL SEHGNIAGIK DSGGAQDTLA AYLQVARDVP
GFEVYSGPDH LVLWSLQNGA AGCISGLGNA MPDVLAGILS AFNAGDIAEA ERQQSIYTAF
RTELYALGFP PALVKRALYL QDSSVGASRQ PALLPNDEQD AKIREILVRF SVPMPL
|
|---|
| |