| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3976 |
|---|
| Symbol | |
|---|
| ID | 5318109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 427192 |
|---|
| End bp | 428202 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640775785 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001312718 |
|---|
| Protein GI | 150376122 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGTGG GCTCCTGCTC ATTGTATCCA GTCACAGATA GCTGCGAATC CGCAGCAAGA
TCAGGCCGCG TAGCGCGCCA AACCGGAAAT CGGAGACCCA CACCGATGGC CCTTCATCAG
GAATCGAATG CCGTGGATTC ACAAGGCCCG ATCATCAGAT CGATCACTTC CGGCGATATT
TCGGTGACCA GAGTCTGTTC CGACCGGTAC GATCTGAAAG CCGCACCGGC GACACCCTGT
GCCGAAGCAT TCAGTGTGAT CGTTCAACTG CGTGACTTTG AAGCCCATCG ACTGTGGAAG
GCTGGCAAGC TCGTTTACGA AGGCGGGCAC TCCAGGGCAT CTCTGGCGAT CACCGATCTG
CGCGATCGCT GGCAGTGTCA TCATCTTTCG CCATTCGACA ATATTCGCTT TCAAATTCCA
TTTGCCCGAA TGAGCGCCTT TGCGAAGCAG GCCGGGCGGA ACGAATATCT GGGGCTTGCC
TCTGTGCAGG GGCGCATCGA TCCCGTGATG TACGGACTTG CCCAGGCGCT GTTGCCGTCG
CTCGAAAGTC CCGAAACTGC CAGTTCCCTT TTTCTGGAGC AAATCAACCT TGCCGTGCTG
GCGCATCTGA GCCAGACATA TGGCGGGCTG CACTTTCCGA TCGGCAAAAA GGGGACCCTT
GCGCCCTGGC AGGAAAGACT TGCGACGGAA TTTCTCGCGA ACCACTTCAA TAAACCGTTT
TCGCTTGGAG AGTTGGCACG CCTTTGCGAG CTGTCGCGCA GCTATTTCAA TAAGGCTTTC
AAGGAGAGTT TCGGGCGCAC GCCATCCAGG TGGCTGAGCG AATATCGGAC CGGGCGCGTG
AAGGAGCTTT TGCTTCAGGA TGTGCCGATC GCGGAAGCCG CAATCGCCTG CGGTTTCGCG
GATCAGAGCC ATCTGACGCG GGTCTTCACT GGTCTGACGG GCGAGACGCC TGCGCGCTAC
AGACGGAAGA ACCGGTGCGC GCGGCCAGCA ATGGAGCAGC TCTCCGGCTG A
|
|---|
| Protein sequence | MVVGSCSLYP VTDSCESAAR SGRVARQTGN RRPTPMALHQ ESNAVDSQGP IIRSITSGDI
SVTRVCSDRY DLKAAPATPC AEAFSVIVQL RDFEAHRLWK AGKLVYEGGH SRASLAITDL
RDRWQCHHLS PFDNIRFQIP FARMSAFAKQ AGRNEYLGLA SVQGRIDPVM YGLAQALLPS
LESPETASSL FLEQINLAVL AHLSQTYGGL HFPIGKKGTL APWQERLATE FLANHFNKPF
SLGELARLCE LSRSYFNKAF KESFGRTPSR WLSEYRTGRV KELLLQDVPI AEAAIACGFA
DQSHLTRVFT GLTGETPARY RRKNRCARPA MEQLSG
|
|---|
| |