Gene Smed_3942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3942 
Symbol 
ID5318523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp391854 
End bp392381 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content58% 
IMG OID640775752 
Productputative cytochrome c protein 
Protein accessionYP_001312685 
Protein GI150376089 
COG category[C] Energy production and conversion 
COG ID[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.104356 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAGAA CAAGACACGC CGTGCCGATG ATCCTCGCCC TGTTCACGCT TATGGCGGGC 
GCCGCGGGCG CAGAAGAAGC GCCGGACAAT ATCACCGCTG CGCGCGACGA AAACGGGCGC
TATTACACCG CCGACGACGT TCCTACTTTC AAGGTCACCG AAGACGGCAC GGTGGACTGG
CTGACCTATT CAGGCTTCCG CCGGTACCAC TCGGAATGTC ACGTCTGTCA TGGCCCGGAG
GGCGAGGGAT CGAGCTATGC ACCAGCCCTG AAGACCTCTG CAATAAACAT GGACTATTAT
GATTTCGTCG ATGTCGTCAC CAACGGACGC AAGAAGGTCA GCGCTGCCGA GAACTCGGTG
ATGCCCGCCT TCGGCGAGAA CGTCAATGTG ATGTGTTATC TCGACGACAT CTACGTCTAT
CTGAAAGCGC GCGGAGCCGA TGCATTGCCG CGAGGACGTC CGGCCAAGAA GGAAGCGAAA
TCCGATGCGA TCAAGGATGC TGAAAAGGCT TGCCTCGGCC ACGAGTAG
 
Protein sequence
MTRTRHAVPM ILALFTLMAG AAGAEEAPDN ITAARDENGR YYTADDVPTF KVTEDGTVDW 
LTYSGFRRYH SECHVCHGPE GEGSSYAPAL KTSAINMDYY DFVDVVTNGR KKVSAAENSV
MPAFGENVNV MCYLDDIYVY LKARGADALP RGRPAKKEAK SDAIKDAEKA CLGHE