| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3880 |
|---|
| Symbol | |
|---|
| ID | 5318560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 336267 |
|---|
| End bp | 337646 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640775692 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001312625 |
|---|
| Protein GI | 150376029 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1035] Coenzyme F420-reducing hydrogenase, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.712619 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAAAT CGGGCCTTTG CATCGGCTGC GGCACGTGCA TGGCGGAGTC GGGCGACGGC
GCTGCGATGC ATCTGGACCG GTACGGCCAG CTCAAGCCGG ACAGATCAAA TAATCCGGCA
GGATTTGCCG AATTGTGCCC CTTTTCGCCC CACGCCCGAA GCGAAGATCA AATCGCTCTG
GCTCGTTTCG GATCGGCGCG ATTTTACGAT TCCCGGATCG GGCGCTTCGA GGCTGCCTAT
GTCGGGCATG TCCTCGAGGG CAGCTTCCGA GTGGACGGCA GTTCAGGCGG CATGGCCAGT
TGGACGGCCG CGGAGCTTTT GAGAAGAAAG CTTGTCGACG CCGTTGCGCA TGTCGTTCCG
CGCGAGGGAG ACGGTGAACG TCTGTTCCGA TATCAGCTCT CGCGGACCGC GGAAGACCTG
CGCAAGGGCG CCAAGTCGCG CTACCATCCG GTGGAGCTAT CCGGAGTCGT CGCCGAGATG
AAGCGCCACC CGGGCCGCTA TGCGGTCGTC GGCATCCCCT GCTTCATCAA GGCGCTCCAT
CTCCTGAGCC TTCAGGACCC GGCGCTCAGG GAGCGACTTG CTTTCACGCT CGGTCTCTTC
TGCGGGCACA TGAAAAGCAC GCGCTTCGTG GAGAGTTTCG CCTGGCAGAT GGGCACGGAC
ATGAACGCCG TCGCGGGCGT CGACTACCGG CTGAAGGACC CCCGGAGACC GGCCAACTGG
TACACCGCCC ATCTGCGGCT CAAGGATGGA AGCACCAGAA GCAAGGACTG GTGGCATCTG
GTCGACGGCG ACTGGGGAGC CGGGTTCTTC CAGAATTCCG CATGCAATTT CTGCGACGAC
GTGGTTGCCG AAACTGCCGA TATTTCCTTC GGCGACGCCT GGGTAGAACC TTATTCCTCC
GATGGACTCG GAACGAATGT CGTCATCGTT CGCTCACCGC TCCTGCAGGC GCTCGTTGCC
GATGCGGTCA AAGAGGGAAG GCTCGAGCTT CGCGAGGTCG ACAGCGACTT CATCGTCGAG
ACGCAGGCAG CCGGCTTCCG GCAACGCCGC GAGGGGCTTG CCTTCCGGCT TGCCTGGCCG
CGTTCCGGCG TACAGCCTAG AAAGCGCGTT GCGCCGGCGT GGAAGGGTTT GCCCGCACAG
CGGATGCTTG TCTACGGATT GCGCAGCGCG ATCAGCGCTG CCAGCCACCG CGTCTTCTGG
TTCGCCAGGA CCATGAAAAT ACCTGCCGCC TATATTCACT GGGCATCGGC GATGCTCGCG
CTCTACCAGG GTGTGACCTA TTCACGCGGC TGGATCGGCA AGCTCGTCGA TGGCGTCTCG
ATGCGCGGGC GCAAGCGTTC GAAGGACGAG GGTTCGAAGG ACGAGGGGGC GGGCGCATAG
|
|---|
| Protein sequence | MVKSGLCIGC GTCMAESGDG AAMHLDRYGQ LKPDRSNNPA GFAELCPFSP HARSEDQIAL
ARFGSARFYD SRIGRFEAAY VGHVLEGSFR VDGSSGGMAS WTAAELLRRK LVDAVAHVVP
REGDGERLFR YQLSRTAEDL RKGAKSRYHP VELSGVVAEM KRHPGRYAVV GIPCFIKALH
LLSLQDPALR ERLAFTLGLF CGHMKSTRFV ESFAWQMGTD MNAVAGVDYR LKDPRRPANW
YTAHLRLKDG STRSKDWWHL VDGDWGAGFF QNSACNFCDD VVAETADISF GDAWVEPYSS
DGLGTNVVIV RSPLLQALVA DAVKEGRLEL REVDSDFIVE TQAAGFRQRR EGLAFRLAWP
RSGVQPRKRV APAWKGLPAQ RMLVYGLRSA ISAASHRVFW FARTMKIPAA YIHWASAMLA
LYQGVTYSRG WIGKLVDGVS MRGRKRSKDE GSKDEGAGA
|
|---|
| |