Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3850 |
Symbol | |
ID | 5318725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 307825 |
End bp | 308895 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640775662 |
Product | spermidine/putrescine ABC transporter ATPase subunit |
Protein accession | YP_001312595 |
Protein GI | 150375999 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.60669 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCCTG TGGTCCAATT CGAAAACGTC AACAAATATT ATGGCGCCCT GCCCGCGGTC GATGGGCTGA ACCTCGCCAT AGAACCCGGC CAGTTCGTGA CGCTGCTCGG CCCTTCCGGG TGCGGTAAGT CGACCACGCT CAGGATGCTC GGCGGTTTCG AGCAGCCCTC CTCAGGCGAG ATCTATCTCG AGGGCAAGGC AATCTCGCAT CTGCCGCCGA ACAGGCGCAA CGTCAACATC GTCTTCCAGG ACTATGCTCT CTTTCCGCAT CTCAATGTCG GCCGCAACAT CGCCTTCGGA CTGGAACTGA AGGGACTGTC TTCCGACGCC ATCCACAAGC GGACGATGGA ACTGCTCGCC CTCGTCAAGC TCGAGGATTT CGCCGGCCGC ATGCCCGACC AGCTTTCGGG CGGTCAAAGG CAGCGTGTTG CTCTGATGCG CGCTCTTGCT CCCGACCCGA ACGTGCTTCT GCTAGACGAA CCCCTGTCGG CGCTCGACGC CAAGCTGCGC CAGCAGATGC AGATCGAACT GAAGACCATT CAGCGAACCA CCGGCAAGAC CTTCATCTTC GTGACTCATG ATCAGGAGGA AGCGCTGACC ATGTCCGACG TCATCGTGGT GATGAATAAA GGCCGGATCG AGCAGATGGG GGACCCCAAC GAGCTCTACT CGCGGCCACG CAGCCGCTTC GTCGCCAATT TCATCGGCCA GAGCAATTTC CTCGAAGGCA AGGCACTCTC GGTAGATGGT ACGGTCGCAA CGATCGACTG GAACGGAACC GCTATCCGCG CCGATGTCAA CGGAACGCAG CCTGCCAAGG ATAGCCCGAC GACCGTCGCG CTGCGTCCAG AGGCACTCTA CTGCCTGGCG GAGCAGCCGC AGGACCGATT CGCCTTGAAA GGCCGTATCG TCCAGCGCGT CTTCAAGGGC GCCCATACCG CGCTCACCGT CGATCTCGAA AACGGAGCGC AGCTCCACCT GCAGCTCGAC CCCGTGGCGC TGTCGCACAT CGGGACGGAC GAGATTTGGG TGGGCTGGCG CGAGCGTGAT GCGGTGGTTC TGGCCGACTG A
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Protein sequence | MQPVVQFENV NKYYGALPAV DGLNLAIEPG QFVTLLGPSG CGKSTTLRML GGFEQPSSGE IYLEGKAISH LPPNRRNVNI VFQDYALFPH LNVGRNIAFG LELKGLSSDA IHKRTMELLA LVKLEDFAGR MPDQLSGGQR QRVALMRALA PDPNVLLLDE PLSALDAKLR QQMQIELKTI QRTTGKTFIF VTHDQEEALT MSDVIVVMNK GRIEQMGDPN ELYSRPRSRF VANFIGQSNF LEGKALSVDG TVATIDWNGT AIRADVNGTQ PAKDSPTTVA LRPEALYCLA EQPQDRFALK GRIVQRVFKG AHTALTVDLE NGAQLHLQLD PVALSHIGTD EIWVGWRERD AVVLAD
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