| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3802 |
|---|
| Symbol | |
|---|
| ID | 5318100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 251915 |
|---|
| End bp | 253483 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640775615 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001312548 |
|---|
| Protein GI | 150375952 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.292136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCCG ATTTCCATTT TCTCCGCCCC TGGTGGCTGC TCGCGGTCCT GGCAGCGGGA
CTGCTCGTAT GGCTGATGCG GCGGCAATCG GACATGCGGT CCCGCTGGAA GCACCTGATC
GCTCCGAACC TGCTCGATCA TCTCCTCATT GACCGTGGCC GGCAGAGCGG ATTTCGACCC
GTCTACCTGG TCGCCGGCCT GATCGCCCTT TCCGGTCTTG CCGCGGCCGG ACCCACATGG
GAGCGGGAAC GTCCGCCCTT CGTCGAAGAC ACCGCCCCGC TCGTCATCGC GGTCGACCTC
GGCCCAACGA TGAACGCCAC CGACATCTCG CCGACGCGGC TGGAGCGCGC CAAGCTCAAG
GTACGCGACA TCATGGCAAA ACGGAAAGGT GCCCGAACCG CATTGTTCGC CTATGCAGGC
TCGGCTCACA TGGTCTTGCC CCTGACCGAA GATGCGTCAC TCATCTCCAC GTACCTTGCG
GCGCTGTCGC CCGCACTTAT GCCTGTCGAG GGCAAGAATA CCGCCAAGGC GCTCGAAGCC
GCCGAGGCAG CTCTTGCGGA CGAGCCGGCG CCAGGCACGA TCCTCTTTTT GACCGACGGG
ATCGAGCAAA GCGCCTTCAC CGCCTTTTCG CAGTATGAGG GCCGCAACGA CCTGATGGTG
CTGGGTATCG GCACGGAAGC AGGCGGACCC GTGAAGACCG AAAGCGGCGC CTATCTGACA
GACGGCACCG GTGCCCGCGT TCTGGCGCGG CTCGATGTCG ACGCACTGCA AGAACTCAGG
TCTTCCTCTT CTGCGCAGGT GGCGACGGTC ACCCTGGACG ACGGCGACGT CGACTGGATC
GTCCGGCGCA TTCAGACGTC CTTCGCACAA AGAACGGAGG AAGGTCTGAC CCGCTGGCGC
GATATGGGAT GGTATCTGAC CATAGTGGTC GCGATCCTCG TCGCGCTCAC CTTCCGCCGG
GGTCATCACG TCCGCTGGCT CGGGACCGTC GTGCTCATCC TGTCGTTCCA CATGCCCGGA
CGGGCGGAGG CGGCGGACTT CATGGACCTG TGGCTGACGC CCGACCAACA AGGGCAGCGC
GCCTTCTCAC GCGGCGACTA TGCTGCCGCG GCCGAACATT TTTCCGACCC GGAATGGCGA
GGCGTCTCAC TCTATCGCGC CGGCCGCTAT CAGGACGCAA TCGACGCATT TGCCCAGTCG
ACGGCACCCG AGAGCTATTT TAACCAGGGC AATTCGCTGA TGCATCTCGA CAAGCCGGAA
GAGGCGATCG GCGCCTATCA GCAGGCGCTC AAGCAGCGCA CCGGCTGGGC CGAGGCAAAG
ACCAATCTTG CGCTGGCGGA ACGCCGCAAA GAGGAAAAGG ACAAGCAGGA AGACGACAAG
CAGCAGGAGG CAGCGGGGCT CGATCCCGAC GAAGTCCAAT TTGACGACAA GGCCAAGCAC
GGCAAGGAGG GCGAGGTCCA GACGGGCGCA CAGACGGCCG AGATGTGGAT GCGCAACATT
CAGGTTTCCC CTGCCGCCCT TCTGGCGCGC AAGTTCGCGA TCGAAGCATC GCAGGAGGAC
CGCCAATGA
|
|---|
| Protein sequence | MIADFHFLRP WWLLAVLAAG LLVWLMRRQS DMRSRWKHLI APNLLDHLLI DRGRQSGFRP
VYLVAGLIAL SGLAAAGPTW ERERPPFVED TAPLVIAVDL GPTMNATDIS PTRLERAKLK
VRDIMAKRKG ARTALFAYAG SAHMVLPLTE DASLISTYLA ALSPALMPVE GKNTAKALEA
AEAALADEPA PGTILFLTDG IEQSAFTAFS QYEGRNDLMV LGIGTEAGGP VKTESGAYLT
DGTGARVLAR LDVDALQELR SSSSAQVATV TLDDGDVDWI VRRIQTSFAQ RTEEGLTRWR
DMGWYLTIVV AILVALTFRR GHHVRWLGTV VLILSFHMPG RAEAADFMDL WLTPDQQGQR
AFSRGDYAAA AEHFSDPEWR GVSLYRAGRY QDAIDAFAQS TAPESYFNQG NSLMHLDKPE
EAIGAYQQAL KQRTGWAEAK TNLALAERRK EEKDKQEDDK QQEAAGLDPD EVQFDDKAKH
GKEGEVQTGA QTAEMWMRNI QVSPAALLAR KFAIEASQED RQ
|
|---|
| |