| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1890 |
|---|
| Symbol | |
|---|
| ID | 5297663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1876228 |
|---|
| End bp | 1877886 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 640770157 |
|---|
| Product | Pyrrolo-quinoline quinone |
|---|
| Protein accession | YP_001307108 |
|---|
| Protein GI | 150021754 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1520] FOG: WD40-like repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGGC TTTCTTTAAT CTTATTATTT ATTTACATAT GCATATTCTC TCAAACATTT
ATTCTAACAA ATGATGGAGT ATATAAATCT TTTGAAAAAA TCCTTTCGGG AAGTTTTTTA
GATATGTTTT ATTTTAACAA CACATTATAT CTCATTGGAA AAGATGAAAT ATTAAATTTT
AAAGCAAACA AAAGCATATA CGTTGAATCT CCAATCTATA TTGGTGAAGG TTATGTTTTT
TCAAAAAACA GACTTTATTT CTTAAAAGAT GACAAATTAA CATTAATTAG AGTTATTTCC
AATATTTCAC AACCTTTCAT ATATAAAGAT GTACTATTTG CAATAAGATT TGGAAATGTT
ATAGCATTAG ATAATGGGAA AATAATCTGG AATCTCTCTC CAGACAAAGG AAAAATAACA
AAAATACGTG TCTCAAATAA TATTCTTGCG GTTTTTTCAA CCTATAATTT ATCATTATTT
GACATAACAA ACCCTAAATA CCCTAAATTT ATAAAAAAAT TCAATCTAGT AGATGATTAT
ATATACAATG GTTATCACGT TTTGTTAAAA GATAATATAA TTTCCATATA TGACAACAAT
AATAAGTTAA TATTTTCACA AAAAGTAAAT GAAGATAAAC TAATAACCGA TGGAGAAAAT
ATAATAGTTG GAAATTACCT TATCACGAAA GATTTAAACA TTACAACTTA TCCTTTCAAA
ATAAAAGCAT TTGTAAGCAT AAATGAAAAA ATAGAAACTG TACAATCAAA ATTTGATATG
CTTTGGAAAG CTTCCATATC CTCAGATATT TCTGGAAAAC CTGTTGCAAA AGATGGAACA
TTGTTTTTAA CAACAACAAA TGGTAAAATC ATGAAAATTC ATAATGGAAA AATTGAATGG
AGCTATACCC TTCCATTTAT TGTTACTGGA CACTTAACAC TCTTAGAAGA TGCAATTTTA
GTTCCTTGTT GGGATGATTA CATATATTCA TTTGATTTTT CCGGTAATTT ACTCTGGAAA
ATCCAACTCG ATTCAGATAT AACTCTAGGT GCAGCATATG ATGGTCAAAT CATATACGTA
GTTTCTGATG AAGGTTTTTT ATACGAAATC AAAGATGGAA AAGTAATATC AAGTTCAAAA
ATTGGGAAAT GGCCAATAAG TGGTCCATAC ATATCCCTTT CAGGACAAAT ATATACCATT
GATGGAATGG GATATTTATG GAAAAATAAC AAAAAAGAAA AATTCGTTGG TAATATAAAA
AATTTAGCAT TTTCTTTAGA AAATCCACAA ATTCCCCCTG AAAATTCAAT CATATTACTA
GATGGCACAA ATAAAATAAT ATTTAATAAG GATTCTGTTT ACATAAACAA CATTAAAGTA
ATAACCTTTG AATTTGATAT TTTAGATGGT GTCATTGGAA AAAAATATCT ATACATATTA
ACCTATGATG GCATACTACA TATATTTGAT AAAAATAGTA TAAAGGTATT AAAAAAAGTG
CATGTAGAAA ACACACCAAA ATTTTTAATA CTAGACAACA TAGGCAACCT GTACGTTATA
GGTAAAACAA TCAATGTCAT TGCTACAAAC GACACTCCAT CTGATCCATG GAATTCTATG
CTTAAAAATT TCAAGAATTC TTCTGCAGTA AATTATTAA
|
|---|
| Protein sequence | MKRLSLILLF IYICIFSQTF ILTNDGVYKS FEKILSGSFL DMFYFNNTLY LIGKDEILNF
KANKSIYVES PIYIGEGYVF SKNRLYFLKD DKLTLIRVIS NISQPFIYKD VLFAIRFGNV
IALDNGKIIW NLSPDKGKIT KIRVSNNILA VFSTYNLSLF DITNPKYPKF IKKFNLVDDY
IYNGYHVLLK DNIISIYDNN NKLIFSQKVN EDKLITDGEN IIVGNYLITK DLNITTYPFK
IKAFVSINEK IETVQSKFDM LWKASISSDI SGKPVAKDGT LFLTTTNGKI MKIHNGKIEW
SYTLPFIVTG HLTLLEDAIL VPCWDDYIYS FDFSGNLLWK IQLDSDITLG AAYDGQIIYV
VSDEGFLYEI KDGKVISSSK IGKWPISGPY ISLSGQIYTI DGMGYLWKNN KKEKFVGNIK
NLAFSLENPQ IPPENSIILL DGTNKIIFNK DSVYINNIKV ITFEFDILDG VIGKKYLYIL
TYDGILHIFD KNSIKVLKKV HVENTPKFLI LDNIGNLYVI GKTINVIATN DTPSDPWNSM
LKNFKNSSAV NY
|
|---|
| |