| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1855 |
|---|
| Symbol | |
|---|
| ID | 5297528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1839275 |
|---|
| End bp | 1841980 |
|---|
| Gene Length | 2706 bp |
|---|
| Protein Length | 901 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640770124 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001307075 |
|---|
| Protein GI | 150021721 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA TATTAATTCT TCCAAATGAA AAAGATTGCA ACATAGAAGG ATACTTATAT
ATTCCTTCAT ATGATGTTTT CCCATTCGAA AAAATAAATA ATTCGTGGTT TGTTCGTTCA
CAACGAATAT ATGCATTGTA CTTAGCTTTA AAAAATAATT TGAAAGCCAC AGCTACTTTA
TATTCAATAA CTAGATATGT AATGCCTCCA GATATATTAA AAAAACACAT CTTCGAATTG
AAAATTGGTG ATAAAATAAC ATCACCTGAA GTTTTGTTTT CAAATCTTGG TTATGAACGA
GTATTTAATG TAACAGACGG TGGACAATTT TCCACTAGAG GAGATATAAT AGATTTCCTT
GGCCCAAATC AAATACCAAC TAGAATTGAA CTCTTTGACA ATATCATTGA AGATATAAGA
ACATTCGATA TTGCAACACA AAAAAGTATC AAAAAATTGG AATATGCAAT TATTTTGCCG
GCCAAAGAAT ATATTGAACC TGTTTTACAC GAAACAATAT TGGGAGAGAA ATACAAAGGT
ACATTTTTAG ATTACAACAT TACATTTGAG GTAGTAAATA AAGAAAAGGT AATAGAAGAA
TATATAAAAA AAGAGAGAGA AATAAGGGAA TTAATAATTG ATCCTCAATT GAGAAAAAAA
TATATAAATT TTTCTGGTAT TGATTATAAC AAGATTTTAG AAGTTTCAAA AGAAAAGATA
TTAGAAAATA CTAAGAAAAG AAAAGAAAAA GCATCAGATG AGATAAACTC AATTCCAGTA
ATTAGTCAAG AAGATTTTCA AATTGGCGAT TATGTAGTAC ATAAAGAATA TGGTATTGCA
AAATTTTCTG GAATAACTAA AATTACTCAA AAAAATCTTG AAAGAGAGTT TTTAATTCTA
CAATTCAAAG ATTCAAAGCT TTTTGTACCA ACTGATAGGT TAGACCTTGT TCAAAAATAT
ATAGGCGCAA GTGAAACAGT TAAACTAGAT AACTTAAGAA AAAGTAATTG GATTAGGAAA
GTAAATAAAG CAAAGAAAGA AATACAAAAT ACTGTAAAAG AACTTTTAAG ATTAAACGCA
CTAAGAAAAA TGACAAAAGG TTTACCACTT CCTGGAGATC CAGAACTTGA AAAAGAATTT
GCCAATACAT TTCCACATAT AGAAACAGAA GATCAACTAA AAGCCATCGA AGAAGTTAGT
GAAGACCTTT CAGCCGATAA AAATATGGAT AGACTTATAG CAGGTGATGC TGGTTATGGA
AAAACAGAAG TTGCAATGAG AGCGGCATTC AAAACCGTAG TCTCTGGAAA ACAAGTTGCA
TTACTCGTTC CCACAACAGT TTTGGCAAGA CAACACTTTG AAAACTTTCA AAAAAGATTT
AAAAAGTTTG GAATTAAAGT TGAATTATAC GACAACTCCC TTACACCAAA ACAAAAAGAA
AATGTAAAAG AAAATGTAAA AAAAGGAATA ACGGACATTG TAATAGGAAC TCACGGAATC
ATAGCATCAA TGAAATTTTC AGATCTAGGG TTATTAATTA TAGATGAAGA ACAAAAGTTT
GGCGTACACC AAAAAGAATC GTTTAAAAAA ATTAGAGTAA ATATTAACAT ACTTTCAATG
AGTGCAACCC CAATTCCAAG AACACTACAT ATGGCACTTA GTGGGATTAA AGATATGTCA
ATTTTAAAAA CTCCTCCAAT TGGTAGAAAA AACATACAAG TTTTTGTTAG TAAATTTGAC
GAAAGAATTG CAAGACAAGC CATTCTAAGA GAAGTAAATA GGGGAGGACA AGTTCTTTAT
GTACACAATA GGGTAAATAC TATTAAAGAT GTTGCAGATA ATCTTAAAAA AATAGTACCA
GAAGTAAAAA TTGAAATAGC TCACGGCCAA ATGTCTAAAA GAAAAATGGA AAAGATTATA
AAAGAATTCT ACGATGGAAA CCTTGATGTA CTAGTTTCAA CTTCGATAAT TGAAAACGGC
ATTGATATTC CAAATGCAAA TACACTAATT GTAGATGATT CACATAGATA CGGATTATCA
CAACTTTATC AACTTAGGGG TAGAGTGGGT AGAAGTGAGA AAAGAGCATT CGCATATTTT
TTCCATCCAT CAAAAATAAA TAAAACTGCA CAAGAAAGGC TTAAAGCAAT AAAAGAAATA
ATGGGACCGG GCAGTGGACT ACAAATTGCT TTAAAAGATA TGGAAATTAG GGGAATTGGT
AATATACTTG GACTAGAGCA ACATGGGTTT ATAAACGACA TAGGGCTTAA TTATTATCTA
GAAATATTAA ACGAAGTTCT ATCCAACTTA GAAGGTAAAA TTGAACCAAA AATAAACACT
GAATTAATCG GAATGAAAGG TTCAATAGTA ATTCCAGAAA ATTATGTTAG TGATCCTGTT
GAAAGGTTAA GACTATACAG AAGAATATCC TCGCTTTCAA CCGAAAAAGA AGTTGATGAA
ATACTAAATG AACTTGAAGA TAGGTTTGGA ACTCCTCCAG AAAGTGTTAT TAATCTCCTA
AAATATACAA AATTAAGGAT TTTATCATCA AAAATGGGAA TTTCAAAAGT TATTTTCAAC
GAAAACTCAA TAATATTATA TTCAAAAAAC AACCTTAATC TAAATATCCC TCATATTTAC
AATGAAAAAG AAAAAGCATA TGTAATTTTT CTTAGTGAAG AAGAATTTAT TGAGTTTCTA
AAATAG
|
|---|
| Protein sequence | MNKILILPNE KDCNIEGYLY IPSYDVFPFE KINNSWFVRS QRIYALYLAL KNNLKATATL
YSITRYVMPP DILKKHIFEL KIGDKITSPE VLFSNLGYER VFNVTDGGQF STRGDIIDFL
GPNQIPTRIE LFDNIIEDIR TFDIATQKSI KKLEYAIILP AKEYIEPVLH ETILGEKYKG
TFLDYNITFE VVNKEKVIEE YIKKEREIRE LIIDPQLRKK YINFSGIDYN KILEVSKEKI
LENTKKRKEK ASDEINSIPV ISQEDFQIGD YVVHKEYGIA KFSGITKITQ KNLEREFLIL
QFKDSKLFVP TDRLDLVQKY IGASETVKLD NLRKSNWIRK VNKAKKEIQN TVKELLRLNA
LRKMTKGLPL PGDPELEKEF ANTFPHIETE DQLKAIEEVS EDLSADKNMD RLIAGDAGYG
KTEVAMRAAF KTVVSGKQVA LLVPTTVLAR QHFENFQKRF KKFGIKVELY DNSLTPKQKE
NVKENVKKGI TDIVIGTHGI IASMKFSDLG LLIIDEEQKF GVHQKESFKK IRVNINILSM
SATPIPRTLH MALSGIKDMS ILKTPPIGRK NIQVFVSKFD ERIARQAILR EVNRGGQVLY
VHNRVNTIKD VADNLKKIVP EVKIEIAHGQ MSKRKMEKII KEFYDGNLDV LVSTSIIENG
IDIPNANTLI VDDSHRYGLS QLYQLRGRVG RSEKRAFAYF FHPSKINKTA QERLKAIKEI
MGPGSGLQIA LKDMEIRGIG NILGLEQHGF INDIGLNYYL EILNEVLSNL EGKIEPKINT
ELIGMKGSIV IPENYVSDPV ERLRLYRRIS SLSTEKEVDE ILNELEDRFG TPPESVINLL
KYTKLRILSS KMGISKVIFN ENSIILYSKN NLNLNIPHIY NEKEKAYVIF LSEEEFIEFL
K
|
|---|
| |